LOCUS       NM_001359289            3608 bp    mRNA    linear   ROD 18-DEC-2022
DEFINITION  Mus musculus GRIP1 associated protein 1 (Gripap1), transcript
            variant 3, mRNA.
ACCESSION   NM_001359289 XM_006527677
VERSION     NM_001359289.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3608)
  AUTHORS   Wilkinson B, Evgrafov OV, Zheng D, Hartel N, Knowles JA, Graham NA,
            Ichida JK and Coba MP.
  TITLE     Endogenous Cell Type-Specific Disrupted in Schizophrenia 1
            Interactomes Reveal Protein Networks Associated With
            Neurodevelopmental Disorders
  JOURNAL   Biol Psychiatry 85 (4), 305-316 (2019)
   PUBMED   29961565
REFERENCE   2  (bases 1 to 3608)
  AUTHORS   Chiu SL, Diering GH, Ye B, Takamiya K, Chen CM, Jiang Y, Niranjan
            T, Schwartz CE, Wang T and Huganir RL.
  TITLE     GRASP1 Regulates Synaptic Plasticity and Learning through Endosomal
            Recycling of AMPA Receptors
  JOURNAL   Neuron 93 (6), 1405-1419 (2017)
   PUBMED   28285821
REFERENCE   3  (bases 1 to 3608)
  AUTHORS   Hoogenraad CC, Popa I, Futai K, Martinez-Sanchez E, Wulf PS, van
            Vlijmen T, Dortland BR, Oorschot V, Govers R, Monti M, Heck AJ,
            Sheng M, Klumperman J, Rehmann H, Jaarsma D, Kapitein LC and van
            der Sluijs P.
  TITLE     Neuron specific Rab4 effector GRASP-1 coordinates membrane
            specialization and maturation of recycling endosomes
  JOURNAL   PLoS Biol 8 (1), e1000283 (2010)
   PUBMED   20098723
  REMARK    Erratum:[PLoS Biol. 2010;8(9)
            doi:10.1371/annotation/b17dfb99-8809-4c5a-86c2-c2a0f7ca7f5e..
            Sanchez-Martinez, Emma [corrected to Martinez-Sanchez, Emma]]
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3608)
  AUTHORS   Kalsotra A, Xiao X, Ward AJ, Castle JC, Johnson JM, Burge CB and
            Cooper TA.
  TITLE     A postnatal switch of CELF and MBNL proteins reprograms alternative
            splicing in the developing heart
  JOURNAL   Proc Natl Acad Sci U S A 105 (51), 20333-20338 (2008)
   PUBMED   19075228
REFERENCE   5  (bases 1 to 3608)
  AUTHORS   Ye B, Yu WP, Thomas GM and Huganir RL.
  TITLE     GRASP-1 is a neuronal scaffold protein for the JNK signaling
            pathway
  JOURNAL   FEBS Lett 581 (23), 4403-4410 (2007)
   PUBMED   17761173
REFERENCE   6  (bases 1 to 3608)
  AUTHORS   Ye B, Sugo N, Hurn PD and Huganir RL.
  TITLE     Physiological and pathological caspase cleavage of the neuronal
            RasGEF GRASP-1 as detected using a cleavage site-specific antibody
  JOURNAL   Neuroscience 114 (1), 217-227 (2002)
   PUBMED   12207967
REFERENCE   7  (bases 1 to 3608)
  AUTHORS   Brunkow ME, Jeffery EW, Hjerrild KA, Paeper B, Clark LB, Yasayko
            SA, Wilkinson JE, Galas D, Ziegler SF and Ramsdell F.
  TITLE     Disruption of a new forkhead/winged-helix protein, scurfin, results
            in the fatal lymphoproliferative disorder of the scurfy mouse
  JOURNAL   Nat Genet 27 (1), 68-73 (2001)
   PUBMED   11138001
REFERENCE   8  (bases 1 to 3608)
  AUTHORS   Means GD, Toy DY, Baum PR and Derry JM.
  TITLE     A transcript map of a 2-Mb BAC contig in the proximal portion of
            the mouse X chromosome and regional mapping of the scurfy mutation
  JOURNAL   Genomics 65 (3), 213-223 (2000)
   PUBMED   10857745
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL671995.4.
            
            [WARNING] On Dec 8, 2023 this sequence was replaced by
            NM_001359289.2.
            
            On Dec 30, 2017 this sequence version replaced XM_006527677.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AW342118.1, SRR7974084.6839.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                AL671995.4         99639-99714
            77-143              AL671995.4         101716-101782
            144-205             AL671995.4         101922-101983
            206-232             AL671995.4         103906-103932
            233-340             AL671995.4         104638-104745
            341-479             AL671995.4         108936-109074
            480-664             AL671995.4         109803-109987
            665-712             AL671995.4         110182-110229
            713-744             AL671995.4         110823-110854
            745-792             AL671995.4         110950-110997
            793-892             AL671995.4         111136-111235
            893-970             AL671995.4         112969-113046
            971-1105            AL671995.4         114006-114140
            1106-1201           AL671995.4         119539-119634
            1202-1414           AL671995.4         119899-120111
            1415-1528           AL671995.4         120254-120367
            1529-1606           AL671995.4         121928-122005
            1607-1702           AL671995.4         122111-122206
            1703-1759           AL671995.4         122328-122384
            1760-1859           AL671995.4         122478-122577
            1860-1990           AL671995.4         124214-124344
            1991-2113           AL671995.4         127673-127795
            2114-2207           AL671995.4         127942-128035
            2208-3608           AL671995.4         128813-130213
FEATURES             Location/Qualifiers
     source          1..3608
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 3.51 cM"
     gene            1..3608
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /note="GRIP1 associated protein 1"
                     /db_xref="GeneID:54645"
                     /db_xref="MGI:MGI:1859616"
     exon            1..76
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..2572
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /note="isoform 3 is encoded by transcript variant 3;
                     HCMV-interacting protein"
                     /codon_start=1
                     /product="GRIP1-associated protein 1 isoform 3"
                     /protein_id="NP_001346218.1"
                     /db_xref="GeneID:54645"
                     /db_xref="MGI:MGI:1859616"
                     /translation="MAQALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQK
                     VAYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSK
                     LCSQLEQLELENRQLKEGVPGAAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVR
                     PSAVGEGQGDPPGDVLPTPLAPMPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETS
                     RLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQK
                     LQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASE
                     LQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAE
                     KRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEE
                     ELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQ
                     EETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQR
                     ILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLSEMNSPSRT
                     QTGDSSSVSSFSYREILKEKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAE
                     TQQEKWMLEEKVKHLEVSSASMAEDLCRKSAIIETYVMDSRIDVSVAAGHTDRSGLGS
                     VLRDLVKPGDENLREMNKKLQNMLEEQLTKNMHLHKASVDHQPAHPSLQPPASLPTQS
                     LAVSFQLALVPPATTFQSSTALLCSPLLPSNQLPRLAHQSAICPSAH"
     exon            77..143
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            144..205
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            206..232
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            233..340
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            341..479
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            480..664
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            665..712
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            713..744
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            745..792
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            793..892
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            893..970
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            971..1105
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1201
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            1202..1414
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1528
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            1529..1606
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            1607..1702
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            1703..1759
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            1760..1859
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            1860..1990
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            1991..2113
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            2114..2207
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
     exon            2208..3608
                     /gene="Gripap1"
                     /gene_synonym="DXImx47e; GRASP-1; mKIAA1167; Sfc10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcacaaag cttgcggggg atggggggag gaacatggcg caagctctgt ctgaagagga
       61 gtttcaacgg atgcagactc agctcctgga gctccggaca aataactacc agctttcgga
      121 tgaacttcgg aagaatggtg ttgaactttc cagtcttcga cagaaggtcg cctacctgga
      181 taaggagttc agtaaagctc aaaaggcact aagcaagagc aagaaagctc aggaagtgga
      241 ggtactgctg agtgaaaatg agatgctgca ggcaaagctg cacagccagg aggaggactt
      301 ccgtttgcag aacagtacac ttatggccga gttcagcaag ctttgcagcc agctggagca
      361 gctggagctg gaaaaccgac aactcaagga aggcgttcct ggagcagctg gagcacatgt
      421 ggacggggag ctgctgaggc tgcaggcaga gaacacagcc ttgcagaaga acatggcagc
      481 actgcaggaa cgctatggga aagaggctgt gaggccctct gctgttggtg agggccaagg
      541 ggatccccca ggagacgtac tccccactcc cctggctccc atgccattgg cagaagtgga
      601 gctgaaatgg gaaatggagc gagaagaaaa aaaattgctc tgggagcagc tacaaggctt
      661 agagagctca aagcaagctg aaacctccag actacaggag gaacttgcta agctctctga
      721 gaaattgaaa aagaaacaag aaagtttttg ccgtctgcag acagagaagg aaacactgtt
      781 taatgacagc agaaacaaaa ttgaagaatt gcaacagcgg aaggaagctg atctgaaagc
      841 ccagttggct cgcacccaaa aactacagca ggaacttgag gctgccaatc agagtttggc
      901 agagctaaga gatcagcggc agggggagcg tctggagcat gcagcagcgt tgcgggccct
      961 acaagatcag atccagacag caaagacaca agaactgaat atgcttcggg aacagaccag
     1021 tgaattggca tctgagttac agcatcgtca agctgaatat gaagagctta tgggacagaa
     1081 agatgacctc aactcgcagc tccaggagtc gttaagggcc aatagccggc tgctggaaca
     1141 acttcaagaa atagggcagg agaaggagca gctaacccag gatctccagg aagctcggaa
     1201 gagtgccgag aaaaggaagg tcatgctgga tgaactagcc atggagacgc tgcaggagaa
     1261 gtcccagcac aaagaagaac tgggggccgt ccggttacgg cacgagaagg agctgctggg
     1321 cgtgcgagcc cgatacgagc gtgagcttcg agaactgcac gaggacaaga agcggcagga
     1381 ggaggagctc cgggggcaga ttcgtgagga gaaggctcga acaagggaat tagaaaatct
     1441 tcagcacaca gtggaagaac tccaggctca ggtacactcc atggatggag ccaagggctg
     1501 gtttgaacgg cgcttgaagg aagctgagga atctttgcag cagcagcaac aggaacaaga
     1561 ggaaaccctc aagctgtgcc gggaggagca cgccgctgag ctgaagggca aggatgaaga
     1621 gcttcagaat gttcgggaac agctccagca ggcccaggag gagcgagatg gccacgtgaa
     1681 gaccatcagc aacctgaagc aggaggtaaa ggacacagta gacgggcagc gcatcctgga
     1741 gaagaaaggc agcgctgtgc tcaaagatct taagcggcag ctgcacttgg agcggaaacg
     1801 ggctgataag ctgcaggaac ggctgcagga gatccttacc aacagcaaga gccgcacagg
     1861 cctcgaggag ctggttctgt ctgagatgaa ctcaccaagc aggacccaga caggggacag
     1921 cagtagtgtc tcctccttca gctaccggga gatcttgaag gagaaggaga gttcagccat
     1981 cccagccagg tctctatcca gcagtcctca ggcccagccc cctcggccag cagagctgtc
     2041 agatgaggaa gtggctgagc tgtttcagag gctggccgag actcagcagg aaaaatggat
     2101 gctagaggag aaggtgaaac acctggaggt gagcagcgcc tctatggcgg aagatctctg
     2161 ccggaaaagc gccatcattg agacctacgt catggacagc cggattgatg tgtctgtggc
     2221 agcaggccac acagaccgaa gtgggctggg cagtgtcctg agagacctag tgaagccagg
     2281 cgatgagaac cttcgagaaa tgaacaagaa gctgcagaac atgttggagg agcaactcac
     2341 caagaacatg cacttgcaca aggcgagtgt ggaccaccag cctgcccacc catccctcca
     2401 accacctgct tccctaccca cacagtccct ggcagtgtcc ttccaactgg cccttgtccc
     2461 cccagctacc accttccagt catctaccgc ccttttgtgt tcacctcttt taccctccaa
     2521 tcaacttccc aggttagccc atcagtctgc catctgtccc tctgcccact gatccatcca
     2581 tgtatgccct tgctccctgt ttacccatct acctgctctc ctacctatct gtcagactat
     2641 catctccgag gctgccagcc atttcccgat gcatcgtcct ttcacgaact catcagtcac
     2701 cacctatttg tcatttgcta cctacctgcc ttcttgacct ctacaaagtt catttgtgaa
     2761 cccatccgcc tgccataggt ccacccacac attaattcct ccccacacct ccacccaaat
     2821 actccctcct cactaaggga gtcatagcca ggttttgcct tgaagaagca agctcacatt
     2881 tgctataaag agaaggtggt tgatcttcct gttcaaggct ggacaccact gggcaccgag
     2941 aatccatcag tccatctaac tacagatcac agctcagatt tgctaacaga gctgcccctc
     3001 tcttcccctc ctctagctcc tgatggctca tttgtttctt aggacatgga agttctatcc
     3061 caggaaattg tgcggctcag caaggaatgt gtggggtccc ctgacccaga cctagaacct
     3121 ggagaagcca actaaagacc tacaggatgc aactattccc aatcctttcc agaatgtcac
     3181 tcactccctt gggctgttgt gggaaaatat ggaggctggc accaaatttc atagtttggg
     3241 agatggacat taaaggggct agaggcctat atgtggctgg tgttggtgac cctgatgtat
     3301 ggcagagccc ttggggagaa gagaccctga gggaagggca aggcttttcc tttttggctc
     3361 tggttcccag ggtcatccgc cttcaactct gcatgagatc tccctcctag agaccaactc
     3421 tgtttcattt tattttattt tttaatttat gtctggaagc ctggctaaac tctgccttcg
     3481 ggactggggg tattgggtgg gggtgcagtc catgttcaat gttccagcaa cgtgtgtatg
     3541 tgtgtgagta tgtgtgtaaa gactatgtgg ccaaaatacc atctggccag acgggcccac
     3601 ccactgac
//
