LOCUS       NM_001379375            3678 bp    mRNA    linear   ROD 02-JUL-2024
DEFINITION  Mus musculus GRAM domain containing 2A (Gramd2a), transcript
            variant 3, mRNA.
ACCESSION   NM_001379375 XM_006511274
VERSION     NM_001379375.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3678)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3678)
  AUTHORS   Yang,M., Shen,H., Flodby,P., Koss,M.D., Bassiouni,R., Liu,Y.,
            Jashashvili,T., Neely,A., Ogbolu,E., Castillo,J., Stueve,T.R.,
            Mullen,D.J., Ryan,A.L., Carpten,J., Castaldi,A., Wallace,W.D.,
            Zhou,B., Borok,Z. and Marconett,C.N.
  TITLE     Alveolar type I cells can give rise to KRAS-induced lung
            adenocarcinoma
  JOURNAL   Cell Rep 42 (12), 113286 (2023)
   PUBMED   37995179
REFERENCE   3  (bases 1 to 3678)
  AUTHORS   Sabik,O.L., Medrano,J.F. and Farber,C.R.
  TITLE     Genetic Dissection of a QTL Affecting Bone Geometry
  JOURNAL   G3 (Bethesda) 7 (3), 865-870 (2017)
   PUBMED   28082324
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3678)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   5  (bases 1 to 3678)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC160637.2.
            
            On Apr 1, 2020 this sequence version replaced XM_006511274.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.1945622.1,
                                           SRR11927932.2811733.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                AC160637.2         85044-85142         c
            100-195             AC160637.2         57201-57296         c
            196-253             AC160637.2         55787-55844         c
            254-329             AC160637.2         55359-55434         c
            330-433             AC160637.2         54691-54794         c
            434-532             AC160637.2         54032-54130         c
            533-604             AC160637.2         53680-53751         c
            605-667             AC160637.2         53150-53212         c
            668-812             AC160637.2         51356-51500         c
            813-909             AC160637.2         51023-51119         c
            910-1014            AC160637.2         49269-49373         c
            1015-3678           AC160637.2         46425-49088         c
FEATURES             Location/Qualifiers
     source          1..3678
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 32.05 cM"
     gene            1..3678
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /note="GRAM domain containing 2A"
                     /db_xref="GeneID:546134"
                     /db_xref="MGI:MGI:3528937"
     exon            1..99
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     exon            100..195
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     exon            196..253
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     exon            254..329
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     exon            330..433
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     exon            434..532
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     exon            533..604
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     exon            605..667
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     exon            668..812
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     exon            813..909
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     exon            910..1014
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..3678
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2549..2554
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /note="hexamer: ATTAAA"
     polyA_site      2565
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /note="major polyA site"
     regulatory      3657..3662
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /note="hexamer: AATAAA"
     polyA_site      3678
                     /gene="Gramd2a"
                     /gene_synonym="Gramd2"
                     /note="major polyA site"
ORIGIN      
        1 gtccccggag ggcactgggt ctggcgcacg gcctcgggct cccggagaag gcgctgcgat
       61 gaccgccctg agccgtagcg agcctgtcga ggcgggcagc aaccaacaaa tgcacgggaa
      121 gatggcacct ctgaagagcc atgtgccctg cacggagaaa ccaggaaagg tccaggagcc
      181 tccagatgat ggcagtctgc actggtcaga aggctcaaag ggtgaagaca taaagaagta
      241 tagccgggaa gggacactac ggagcaaata caaccaacaa taccacaagc tgtttaaaga
      301 tatcccgttg gaggaggtgg tcctcaaagt gtgttcctgt gccctccaga gagacctcct
      361 tctccatggt cggctctata tctctcccaa ctggctttgc ttccatgcca gcctctttgg
      421 caaggatatc aaggtggtca ttcctgtggt atctgtgcaa ttgatcaaaa aacacaagat
      481 ggcacgactc cttcccaatg gactggccat caccacaaac accagccaga agtatgtctt
      541 tgtgtctctg ctttcccggg acagtgtata tgacatgctg aggagggtct gcactcacct
      601 gcagccttcc agcaagaaga gtctgagtat aaggaaattt ccggaggaag ccgagtgcga
      661 gtccccggaa gtccttatcc ccgagatgaa gtggagaaaa gcatgctcag cccccgcatc
      721 cctgtcactc ccagacagca tctcttgtat ctctcagatc ccgacagact ccacagatag
      781 ctgcttcccc tccaggaagc ctccagggtc tgaggccgtc tgtgagaaag atgcattgga
      841 ggaagagccc agcacggacc aggaactgag gctgtgggat tctcggctcc tcaaggtcat
      901 ctttgtgatg atctgctttc tagtcctgtc ctcgtcctat ctggcattcc gaatctccag
      961 gctggaacag caattatgtt ccctgagctg gggcagtcca ctcccaaggg acaggtaaca
     1021 gtcacttggt cttcatccca caccttatgc aaggatgctc tgggtgctgt ctctaccaag
     1081 gattcctggg gtttatactg cggctgtgct gagactgagt atgaagaaca tgttctagat
     1141 tcttcctcca gactcctccc tagcacctcc ctcagtgagt gacctgaagt acctgtttac
     1201 agattaactg gctcctacaa cttttggact caaacagaat gttagactgt ttttgtgttt
     1261 ttatcagttg aggagttctg tacactaagc ttcagcgacc actgaagtgg cagaaagcac
     1321 attaacttgt tttattgtaa gcaatggttc tggcacaccg acagagccct ggggggccac
     1381 ctccggggac aaagggcatg ctttgatacc tggactgctg cttgctatca catgacacac
     1441 cctagaacat gtaggggagt tgggataggg tgttcccacc tctgcgggct ctgctgcctc
     1501 ccagcattct gggatcacac ttgggcctct cagaatcttt gttctcgagc tcgcaggact
     1561 tttcttcagg gagccaggca ctaggacctt tgagaaggct gggatgtgga gaagagagct
     1621 cttgataggg cttatcaaga gaccaatctt agttttctga gctgagctgg atgactctgg
     1681 gctggccctg caagagctgt ctagctgaat ttgggaagat gccccctgca ggtcaggaag
     1741 gacatggggc tgagattgga ggtcccagaa ctcccatttt ggagcagccc cctctttagt
     1801 aggacaaggg gaacaggtac tgtggtattc agtagtaagt cagttcccat tggttgcaga
     1861 cattcccaag gtcctagaca ttagcaatag gaaggcagga catttgattt aagctctagt
     1921 ggttggtata cttcctccat ggtcgactgc actggtcagg gtggcttgac tgggcagtgg
     1981 gatccagctg caagatccag cagtgttggg cccttcttgg cagagctcac tcattccatg
     2041 gacctgcagt ccatatgcta ttggacactc tgtaggattc cagtaatcat aagtaaggta
     2101 gaagtgtccc agatgggata ggctccaggc agagaccagg aaaagagatc tctgactccc
     2161 ttgaggagaa gatgaggagg tggtgagatc agtgcacact gatggttttg tcataaagaa
     2221 tcttccccat ctacttatct tctatctcct caggactctc atctgctaag acagtgcctt
     2281 tgaaggttct agaagggtct tagggaggaa gccagaggta tcaaggaaag gcacaggtgg
     2341 tgtggagtgg tgctggaaat agcctctgtt cccctctctc ttgtgctggg aggttaaccg
     2401 gggaaggaaa ccctggtgga aatgattgca gggctgtttg tctcattcag gacaaatcca
     2461 agcagtactg gagagaggga cagtgggtga caacttcctg ggtttagact ggaagttttg
     2521 ccatcatctc cctattctag ttcctaggat taaacatgga acccagcctt gtctgttgtt
     2581 tgtaccaaat ctttcatctc aggtgaaacc cggtgtccat ttggtcctcc ttctagggct
     2641 gcaccatcca atgcccatcc tccaatgccc atcctccagt gcccatcctc cagtgcccat
     2701 cctccagtgc ccatcctcca atgcccatcc tccaatgccc atcctccagt gcccatcctc
     2761 cagtgcccat cctccaatgc ccatcctcca gtgcccatcc tccagtgccc atcctccaat
     2821 gcccatcctc cagtgcccat cctccaatgc ccatcctcca atgcccatcc tccagtgccc
     2881 atcctccaat gcccatcctc caatgcccat cctccagtgc ccatcctcca atgcccatcc
     2941 tccaatgccc atcctccagt gcccatcctc cagtgcccat cctccagtgc ccatcctcca
     3001 atgcccatcc tccagtgccc atcctccagt gcccatcctt taatgcactt ccatcctttt
     3061 gtcttaacca tcctccatca ctctttccca tcttatcgtc atggaaacaa tactccttgc
     3121 cccagtgctt tccctccctg gtccctgctg aggggcgaga gtacagggcc attctctgag
     3181 ccttgctagg ttgagccagg gttcatgcca agtcacaagt ggctgtgcca acatgctgta
     3241 ggaagcccat tctccaaaca acatgctgta ggaagcccgt tctccaaaca acatgctgta
     3301 ggaagcccgt tctccaaaca acatgctgta ggaagcccat tctccaaaca aggctgcaag
     3361 ggcaagaggc aagctgcagg gcagctgatt ttgaagagag ccttgaagcc agagctttga
     3421 gtgatatggg tgtgtccatg cctctggagg gtcctctctc tgctcctcta gaggagctgt
     3481 gtgtcggttg cgatcgttca taacctgtga gtgtgtatcc actcccgacg ctcctccggt
     3541 tctctgaggg cttgcttcaa caagagtggc ttgttcacca tggcattagc ctttgaagtt
     3601 tttaaaaaat gggttaattc ccaggtactg aaaaaatgtt ttgttttgtt tttttaaata
     3661 aaaaccttga tttttcta
//
