LOCUS       NM_028487               3453 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus GC-rich promoter binding protein 1 (Gpbp1), transcript
            variant 2, mRNA.
ACCESSION   NM_028487
VERSION     NM_028487.6
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3453)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3453)
  AUTHORS   Hsu,L.C., Liu,S., Abedinpour,F., Beech,R.D., Lahti,J.M., Kidd,V.J.,
            Greenspan,J.A. and Yeung,C.Y.
  TITLE     The murine G+C-rich promoter binding protein mGPBP is required for
            promoter-specific transcription
  JOURNAL   Mol Cell Biol 23 (23), 8773-8785 (2003)
   PUBMED   14612417
  REMARK    GeneRIF: binds specifically to the adenosine deaminase gene
            promoter
REFERENCE   3  (bases 1 to 3453)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC118475.44.
            
            On Jun 27, 2022 this sequence version replaced NM_028487.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC096442.1, AY382529.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-153               AC118475.44        67888-68040
            154-1101            AC118475.44        69388-70335
            1102-1221           AC118475.44        90788-90907
            1222-1345           AC118475.44        104262-104385
            1346-1569           AC118475.44        104511-104734
            1570-1636           AC118475.44        108759-108825
            1637-1696           AC118475.44        109803-109862
            1697-1881           AC118475.44        116942-117126
            1882-2022           AC118475.44        118514-118654
            2023-2190           AC118475.44        119634-119801
            2191-2378           AC118475.44        121174-121361
            2379-2481           AC118475.44        124108-124210
            2482-3453           AC118475.44        131107-132078
FEATURES             Location/Qualifiers
     source          1..3453
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 63.23 cM"
     gene            1..3453
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /note="GC-rich promoter binding protein 1"
                     /db_xref="GeneID:73274"
                     /db_xref="MGI:MGI:1920524"
     exon            1..153
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            154..1101
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1102..1221
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1345
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1346..1569
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1570..1636
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1637..1696
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1697..1881
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1882..2022
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            2023..2190
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            2191..2378
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            2379..2481
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     exon            2482..3453
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2948..2953
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /note="hexamer: AATAAA"
     polyA_site      2975
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /note="major polyA site"
     regulatory      3434..3439
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
                     /note="hexamer: AATAAA"
     polyA_site      3453
                     /gene="Gpbp1"
                     /gene_synonym="1700034P14Rik; D230035M11Rik; Gpbp; mGPBP"
ORIGIN      
        1 attgcggatc gggtcggcgc cattttggga ctgagactgg ttgtggggga gggaaaagcg
       61 gcaaaagggg attattcaaa gtaccgaaaa cctcctcccg ggatcgagcg cagcggcacc
      121 cccaggccag gggcacctct ggtggggcag aaggtggttg aatttggcgt atgaagatca
      181 tcatctaggt tttgtttaaa aggccccgga tatttcaagt ggccattttg gaattacagt
      241 tttgtttttg ttttgggcaa ttttgctcca gaagttcatt aaaattgaca agaatcatct
      301 ctgaagtgaa ttgatagtag tgaacaaatt caacgagcta ctaaaagtcc cagccatttc
      361 ttcagtattt tgggtcaaac ggattatata agtggttaaa gcatttcatc tggtgttatt
      421 tttgtctctt tcccctctcc tgtttgtgtt cttcagccaa aactgtaaga tatgtttgat
      481 ttgtgtacca agtagtttca gcagtttcaa attactgttt aaatattgct gaagttttgt
      541 ggcagttctt tttaccttta ttaaaagttt tagtaatttt tgacttcagc ttttttcata
      601 ttacaatggg acagcttttc taaatgaaga cattgaaaga atacagcgtt tttttctttt
      661 tatcttttat ttacttggga atgtaagatg ttccattttc acaccagcat ggtagtattg
      721 agatagctat ttgtctatac acgctgatgt ttagaagtaa tcttcagatg tgaaattttt
      781 ctttttgttt ctgctttttg gcacataaat tggctatttc ttctggagtg gataagtaca
      841 acagtgacaa atacatggaa cagtaaagaa gaccttgctc ttaaatccaa ggaacctggc
      901 taactctgga tctgaccata tgaaaacttc aaagtaaata tgggtagctg acttcaagta
      961 actctatgtc aaatagtcat aggttaagta tcttcaaaga acttggatat ttcagaggat
     1021 acaaaataaa aaaacaaact ggaaaacata aagcttatag agaagaaatc aacaccttct
     1081 tgtgcagtcc ttttggaatt tggacttgcc atgaggtgtt gaagccttgt ttcactgagt
     1141 tggagagact ggacctaaat ggcgcagcat gactttgctc cagcctggct taattttcct
     1201 actcctccat catcaacaaa gtcatcattg aattttgaga agcactctga aaatttttca
     1261 tggacagaaa atcgttatga tgtgagtcgt cgacgacaca attcttcaga tggctttgat
     1321 tctggtattg gacgtcctaa tggaggtaat tttgggagga aagagaaaaa tggatggcgt
     1381 acgcatggca gaaatggtac agaaaacata aatcatcgtg ggggatacca tggtggaaat
     1441 tcccgttctc gtagcagtat tttccattct ggaaaaagcc aaggactaca tgaaaacagc
     1501 atccctgaca atgaaactgg gaggaaagaa gacaaaagag aacgcagaca gtttgaggct
     1561 gaggattttc catctttaaa tcctgaatat gagagagaac caaatcagaa taaatcttta
     1621 gctgcgggtg tttggggcct acacgcccag acacacacat acccaaccaa aaaaatctcc
     1681 caagctcctc tcttagacta tcccccgaat cctaaatcta gaactccaag aatgctggtc
     1741 attaagaaag gtaatacaaa agacttacag ctatctggat tcccagtagc aggaaacctc
     1801 cagtcacagc cagttaagaa tggaactggt ccaagtgttt ataaaggctt agtccccaaa
     1861 cctgctgttc cacctacaaa acctacacaa tggaaaagcc aaactaaaga aaacaaagtc
     1921 gggacttctt tttctcatga atctacatat ggtgttggca actttaatac ttttaagtca
     1981 acggccaaga atattagtcc atcaacaaat tcagtgaaag agtgtaatcg ttcaaattct
     2041 tcttcgcctg ttgacaaact taatcagcag cctcgtttaa ctaaactgac acgaatgcgc
     2101 agcgataaaa agagtgaatt tttgaaagca ttgaaaaggg acagagtgga ggaggaacat
     2161 gaagatgaaa gtcatgctgg ctcagagaag gacgacgact catttaattt gcataacagc
     2221 aatactactc accaagaaag agatataaac agaaactttg atgaaaatga aattccacag
     2281 gagaacggca atgcctcgat gatttctcaa cagatcattc gttcttcgac ttttccacaa
     2341 actgatgttc tttccagttc actagaggca gaacacagat tattaaaaga aatgggctgg
     2401 caggaagaca gtgaaaatga tgaaacatgt gctcccttaa ctgaggatga aatgagagaa
     2461 ttccaagtta ttagtgaaca gttacagaag aatggtctga gaaaaaatgg tattttgaaa
     2521 aatggcctga tctgtgactt caagtttgga ccctggaaaa acagcacttt caaacccaca
     2581 attgagaatg atgacacaga gacaagtagc agcgacacgt cggatgatga cgatgtgtga
     2641 aggagatcct cacagcttta gaaatgttag tgtgatacat ctctcatgca gtttggggtg
     2701 aattgtaaaa atgaagaact ataatttatg tagtgaacct accccattag aagatgattt
     2761 tttgggggac ttcgatatga agaaaaccaa gaatgttgtg ttgggctgtg ttgaacatta
     2821 tttctttgta aatgaatgtt gtagaaatga ggactttggt tgatccaaca ttgactttct
     2881 tcatcactgc agcatttctc ttgactagca atgtgacgat gtaacaaatg agattttctc
     2941 atttaataat aaaaaattgt gtgatgtttt gcaaagcttc tgtcttaaaa tgttcaggtc
     3001 ttaaggtaca aggcagctta cagttttgct tgcagagtcc tatctttttc aaactgtgga
     3061 aatcttcaac tctacgtgtg cacctcctta tccactcccc ctaaaacaaa acaacagcaa
     3121 aaaggaaaat gtagcatgtt ggctaaaacc ggagcagagt gactaaaaca ttagcttctt
     3181 gaactcaact cttgtactaa gtcacctttc caaacaaatt cctctttagt ctttggtagc
     3241 agtgaatgtg ggagaggaga catgccaggc gctcttccaa gcttcaggag gggcttgtca
     3301 ggagctttgt tcggtgtgct gtcagatcag gattctcaga ggggattgca agagttgtgg
     3361 gaaaacttat tttgataaat tattacacat gcagaaaacc tgatcactga ctggatctgt
     3421 ccacaacatg gaaaataaac tggattttca gaa
//
