LOCUS       NM_001110809            1636 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus G patch domain containing 4 (Gpatch4), transcript
            variant 2, mRNA.
ACCESSION   NM_001110809
VERSION     NM_001110809.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1636)
  AUTHORS   Nagamachi,A., Matsui,H., Asou,H., Ozaki,Y., Aki,D., Kanai,A.,
            Takubo,K., Suda,T., Nakamura,T., Wolff,L., Honda,H. and Inaba,T.
  TITLE     Haploinsufficiency of SAMD9L, an endosome fusion facilitator,
            causes myeloid malignancies in mice mimicking human diseases with
            monosomy 7
  JOURNAL   Cancer Cell 24 (3), 305-317 (2013)
   PUBMED   24029230
REFERENCE   2  (bases 1 to 1636)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BI658293.1, AK169111.1 and CF616874.1.
            
            On Nov 20, 2013 this sequence version replaced NM_001110809.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 3. Variants 1, 2 and 3 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK011617.1, AK169111.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-11                BI658293.1         1-11
            12-1632             AK169111.1         1-1621
            1633-1636           CF616874.1         470-473
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="NMRI"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 38.78 cM"
     gene            1..1636
                     /gene="Gpatch4"
                     /gene_synonym="2610029K21Rik; Gpatc4"
                     /note="G patch domain containing 4"
                     /db_xref="GeneID:66614"
                     /db_xref="MGI:MGI:1913864"
     exon            1..74
                     /gene="Gpatch4"
                     /gene_synonym="2610029K21Rik; Gpatc4"
                     /inference="alignment:Splign:2.1.0"
     exon            75..202
                     /gene="Gpatch4"
                     /gene_synonym="2610029K21Rik; Gpatc4"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..1371
                     /gene="Gpatch4"
                     /gene_synonym="2610029K21Rik; Gpatc4"
                     /codon_start=1
                     /product="G patch domain-containing protein 4"
                     /protein_id="NP_001104279.1"
                     /db_xref="CCDS:CCDS50948.1"
                     /db_xref="GeneID:66614"
                     /db_xref="MGI:MGI:1913864"
                     /translation="MSVTPEVKSRGMKFAEEQLLKHGWTQGKGLGRRENGITQALKVT
                     LKQDNHGVGHDPAKEFTDHWWSDLFNKTAASLVVDSGKDGVQIRRLSKETTQRSHPKP
                     SLLYQKFVKTATLTSGEEKPDRDLGNCSDVDNHEPTPPKILTDEMLLKACEGRTAHKA
                     ARIGITMKAKLARLEAQEQAFLAQLKGSKALGTSQPLTDSEPSQKKKKKRKQKEGEEA
                     ATTEKSLGDELLGHTDRSFRDSRKKKKRQKAERQGTAIGSEEEEAAGESGPRELSTEQ
                     SDQPSRKKKKRRKQRHEEDGEMGVCDEGGRDVTSRPKAVNSGGDKDPRRSSKKRGTCG
                     EDLDTQEEEGKDDLTKGERKVRRKDKRKRQQCCEEDLDVSSKDDGGTWVAEDAGERSR
                     QYPKERAKKKKRKRDRGSEVDLS"
     exon            203..276
                     /gene="Gpatch4"
                     /gene_synonym="2610029K21Rik; Gpatc4"
                     /inference="alignment:Splign:2.1.0"
     exon            277..369
                     /gene="Gpatch4"
                     /gene_synonym="2610029K21Rik; Gpatc4"
                     /inference="alignment:Splign:2.1.0"
     exon            370..456
                     /gene="Gpatch4"
                     /gene_synonym="2610029K21Rik; Gpatc4"
                     /inference="alignment:Splign:2.1.0"
     exon            457..548
                     /gene="Gpatch4"
                     /gene_synonym="2610029K21Rik; Gpatc4"
                     /inference="alignment:Splign:2.1.0"
     exon            549..599
                     /gene="Gpatch4"
                     /gene_synonym="2610029K21Rik; Gpatc4"
                     /inference="alignment:Splign:2.1.0"
     exon            600..1636
                     /gene="Gpatch4"
                     /gene_synonym="2610029K21Rik; Gpatc4"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1635
                     /gene="Gpatch4"
                     /gene_synonym="2610029K21Rik; Gpatc4"
                     /note="major polyA site"
ORIGIN      
        1 ttcacttccg ggaagatggc tgcacccaag tcgggtgtca cacgtgcttc cacggagagg
       61 actgtacact gacgaggata gtgccatgtt ttccctggtg agaacctgag gacagaccct
      121 gccatgagtg tcaccccaga ggtcaagagc cgtgggatga agtttgctga agagcagctg
      181 ctgaagcatg gatggactca aggcaagggc ctgggccgga gggagaatgg cattacccag
      241 gccctcaagg tgacactgaa gcaagataac catggggtgg gacatgaccc tgccaaggaa
      301 tttacagacc actggtggag tgatctcttc aacaagactg ccgccagctt ggtagtggac
      361 tcggggaagg atggagtgca gataagacgt ctttccaagg agaccaccca gcgcagtcac
      421 cccaaaccca gcttgctgta tcagaagttt gtgaagacag ccacactaac ctcgggtgag
      481 gagaagcctg acagagactt ggggaactgc agtgatgttg acaaccatga gcccacgccc
      541 ccaaagattc tgactgatga gatgctactc aaggcttgcg aggggcgaac agcacacaag
      601 gctgcccgga ttggtatcac catgaaggcc aagcttgctc gcctggaggc ccaagagcag
      661 gcctttctgg ctcagctcaa aggctcaaag gctctgggca cctctcaacc actgactgac
      721 agtgagcctt cccaaaaaaa gaaaaagaag aggaagcaga aagaggggga agaggctgca
      781 acaactgaaa agagtctagg tgacgagctg ctgggacaca cggacaggag cttcagggac
      841 agcaggaaga agaagaagag gcagaaagcc gagagacagg gaacggctat aggaagtgag
      901 gaggaagagg ctgcaggaga gagtgggccc agagaactga gcacagagca atctgatcag
      961 ccttccagga aaaagaagaa aaggaggaag cagcgccatg aagaagacgg ggagatggga
     1021 gtctgtgatg aaggaggtag agatgtgaca agccggccaa aggcagtcaa cagtggagga
     1081 gacaaagacc ccaggagaag cagcaagaag cgagggacgt gtggggagga cttagatacc
     1141 caagaggaag aagggaagga tgacctaaca aaaggagaga gaaaggtcag aagaaaagac
     1201 aaaaggaaaa gacagcagtg ctgtgaggag gacttagatg taagcagtaa agatgatggt
     1261 gggacatggg tagcagagga tgcaggtgag agaagtcggc aatacccaaa ggagagagcc
     1321 aaaaagaaga agcggaagag ggaccgaggg tctgaagtgg atctcagctg actccttttc
     1381 agggatagcc tggtttaggg cagggtttct gcacactctg caagcagctc tggagcccca
     1441 gtctgcagag gagagccaat gcattctata ctggctgagg gggtggacat ggtcccctgt
     1501 gaaacttgct gtccaaaaag tataaacctg gtgcctggca gctcaccagc taaaggatgg
     1561 tgggaagagg aatcaggatg gaggaatatt tggagtgtct cttttaaaag tctgaaaatg
     1621 tagacttaca tgaaat
//
