LOCUS       NM_027405               3967 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus G patch domain containing 2 like (Gpatch2l),
            transcript variant 1, mRNA.
ACCESSION   NM_027405 XM_994459
VERSION     NM_027405.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3967)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3967)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3967)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   4  (bases 1 to 3967)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 3967)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY146148.1 and BC058256.1.
            
            On May 7, 2016 this sequence version replaced NM_027405.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC058256.1, BC048169.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-20                BY146148.1         1-20
            21-3967             BC058256.1         1-3947
FEATURES             Location/Qualifiers
     source          1..3967
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 40.36 cM"
     gene            1..3967
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /note="G patch domain containing 2 like"
                     /db_xref="GeneID:70373"
                     /db_xref="MGI:MGI:1917623"
     exon            1..87
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /inference="alignment:Splign:2.1.0"
     exon            88..759
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..1546
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /note="isoform 1 is encoded by transcript variant 1; G
                     patch domain-containing protein 2-like"
                     /codon_start=1
                     /product="G patch domain-containing protein 2-like isoform
                     1"
                     /protein_id="NP_081681.2"
                     /db_xref="CCDS:CCDS26065.1"
                     /db_xref="GeneID:70373"
                     /db_xref="MGI:MGI:1917623"
                     /translation="MDELVHDLASALEQTSEQSKLGELWEEMALSPRQQRRQLRKRRG
                     RKRRSDFTHLAEHACCFSEASESSLDEATKDCREVAPLTNFSDSDDTVVAKRHPALSA
                     IIRGKQHSWPESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQKLKVSDWSYERGCRF
                     KSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSQPGRKERMECEAEEQKHGSDENM
                     SECDTSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGECVPGFTVHNLLPKWAPDHCTE
                     VERMDSGLDKLSDPTFLLPSRPAQRGYHGRLNRLPGAAARCLRKGRRRLPGKEASMSS
                     LGTERIGHTISDPRQTDFWLPSAGKRERNQFNPLSPLYSLDVLADASHRRCSPAHCSA
                     RQASVHWGPPCPRDIKRKRKPVASASFSSPSPVHPDVLEPAIPAQKPPDSEWLDGTSA
                     AEKATAFPPATFFKMPQEKNSGCSSSPGTNGC"
     exon            760..824
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /inference="alignment:Splign:2.1.0"
     exon            825..1001
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /inference="alignment:Splign:2.1.0"
     exon            1002..1081
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /inference="alignment:Splign:2.1.0"
     exon            1082..1149
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /inference="alignment:Splign:2.1.0"
     exon            1150..1189
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /inference="alignment:Splign:2.1.0"
     exon            1190..1275
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..1370
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..3939
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3588..3593
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /note="hexamer: AATAAA"
     polyA_site      3615
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /note="major polyA site"
     regulatory      3914..3919
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
                     /note="hexamer: AATGAA"
     polyA_site      3939
                     /gene="Gpatch2l"
                     /gene_synonym="1700020O03Rik; 4732487G21Rik;
                     A630090I05Rik; Kiaa1152"
ORIGIN      
        1 agaccggaaa tgaggtcaga gagggaaacc caggctggga gctacggccc cgaaggcggc
       61 gccgggtgca agcgactgcg gcagccgatg cggcctcatg gatgagctag tgcatgacct
      121 ggcctcagcc ttggagcaga catcggagca gagcaagctt ggtgagctgt gggaggagat
      181 ggccctgagc cccagacagc agaggcggca gcttcgcaaa cgccgaggac ggaagcgccg
      241 gtctgacttt actcacctgg cagagcacgc ctgctgcttc agcgaggcct ctgagtcaag
      301 tctggatgaa gccaccaagg actgccgaga agtggctccg ctcaccaact tcagtgactc
      361 tgatgacacg gtggtggcca aacggcaccc agctctcagt gccatcatta ggggtaagca
      421 acattcttgg cccgagtctg actcctttac ggaaaacgca ccttgtcgac ccctcaggcg
      481 ccggcggaag gtgaagcgag tgacgtccga ggtggctgcc agccttcagc agaagctgaa
      541 agtgtcagat tggagctatg agagaggctg caggttcaag tctgccaaga agcagcgtct
      601 atcccgctgg aaggagaata ctccctggac ctcatctggc catgggctgt gtgaatcagc
      661 agagaatcgg actttcctaa gccaaccagg aaggaaagaa aggatggagt gcgaagccga
      721 agagcagaag cacggctctg acgagaacat gtccgagtgt gacactagca gtgtgtgcag
      781 cagcagtgac acggggctct tcaccaatga tgaaggacga caaggggatg atgagcagag
      841 tgattggttt tatgaaggag aatgtgtccc cggattcact gtccataacc ttctgcccaa
      901 gtgggctcct gatcactgca ctgaagtaga aaggatggac tccggcctgg ataaactctc
      961 agaccccacg ttccttttac cttcccggcc agctcaaaga ggataccatg gtcgtctgaa
     1021 taggttgcca ggagctgcag ctcgttgcct caggaagggg cggagaaggc tgcctgggaa
     1081 ggaggcgagc atgagcagcc tggggacgga gaggatcggc cataccatca gtgacccccg
     1141 gcagacagat ttctggttac catcagctgg gaaaagagaa cggaatcagt ttaatccact
     1201 ctcccctctt tactccctgg acgttcttgc tgatgcttct catcgaaggt gctcacctgc
     1261 acactgctct gccaggcagg caagtgtaca ctggggacca ccatgtccac gtgacattaa
     1321 gaggaaacgg aaacctgtgg cctcagcatc tttttctagc cctagtccag tgcacccaga
     1381 tgttctggag ccggccatcc cagctcagaa gcctcctgac tccgagtggt tggacgggac
     1441 ctctgcagca gagaaagcca ctgcctttcc tccagccacg tttttcaaaa tgccacagga
     1501 aaagaattct ggctgcagct ctagcccagg aaccaatggg tgttgaaact ttgtattgta
     1561 cagtcttagt gttctgattg gcagtcttgg gcctaatgcc acaaggactg actcctcgtc
     1621 acgcacagca gttgctcttt ctttgagaaa atatttgggg aatctttttt tgtaaaatat
     1681 caattttcct taagtgggtg gggcaccctc tgctgtcccc ttccttcgtt gctcgcccac
     1741 cattcacctt cagctgctgc cttagagctg cctctccttg gcagctgtgt ctttgttcct
     1801 gaaaatctag caacagcttt tgcgtacctt ctgtgtagag cttttcatgt cgctgatgaa
     1861 atcctaaatt tgcagccagt tggaaacacg ttgctggatg ggattgtgtc tgtgcagtaa
     1921 ggctggccat cgagtctcca tcccctcagg accagtaaga gacagcaacc aagttctcag
     1981 cttagggccc cagaagagac accagcagga tggcgtggga gccttccctt gcctgcacat
     2041 ggtctgaggg gatcgccagc ggctccattg tacctgacct cagcctcctg ctcagtgttc
     2101 tcccgatagg gcccagaggt ctgtgtgctc cagtgcagat gggggtttag gtgctcggca
     2161 aactagtgga tgatgtgctg accccagcct aaggctttat ctcctaagtg gaatttcact
     2221 gttagtattt tagaggtcgg taaccagtgg taagcagaaa ctcctgctct tatctgttat
     2281 gtaatggtta gttggggcca tggtttagga agaaacgatg tctttttgac atgcctttct
     2341 atgtggtgtg tttatgaccg ctcagctgca agtacagttg tgtatatagt tgtgcccgaa
     2401 gttgatgcta ctttgtcaag gtgaggagga agtgagtgcc tggagctgct ggggaagagc
     2461 cacatttccc aaaagtgtca tctggagcac ctgccattca gggctgtgct tgacacagct
     2521 ctctcttttt gtatcagctg agtgtgttga ctgtgaaaca catggtagcg ttgttaaatg
     2581 ctcgctgcct tggtcatgtc agagagaaaa acctctcctt aagacagcta gcaggtgatc
     2641 cggtgcgtcc tctccctgaa gggtcattat ccctcccagg gagtgtaagc agtgtgttcc
     2701 cccgagagct acattcattt gggaggccac tctgtgactc ttcagcagtg aggtgggcag
     2761 gggccagaat gtgagtctgt ttgcaaaggg aagcctgaag ctcggtggct gagaatgtat
     2821 cagctgacca taacaaaaat ggtagagggg gtgcagaaag agattgcagg atgagaagag
     2881 taacaccaaa ccctgtcccc cccccccccc ccccgagtca ctctggtcac aaggtgactt
     2941 actgtaactg actgtcttat gggcgtctca gctgcatcca cagaagacag ggactgtggc
     3001 actgttacat agttcaaagg tgaaagtgga tgtgtgtgtg ccgtctgctc ctgcagtggc
     3061 cagtggaaca catttctact gtcctgagtt gggttgaggg agaaatctac tgacgatgct
     3121 ttttaaatat ttccaaactg gttcactggt cttgatgacg gcttgttgag acctccacag
     3181 ttaggtgcag aggtatcccc tagctttcct ctgtggtaca ttgtggtata ctgcctggtc
     3241 cgtcgtcctc tttttacctg ggatttaaag tagcttatat atacatattt atttatattt
     3301 taaatatctc tctgaagcca tgccaatatt cagaggtgaa ggcagagttg catgctttac
     3361 tccattgtat gagtgagccc acactgaaac aacagacgtc cctgctaggc tgccctggtt
     3421 atataatctg ttctttctca ttggtgtccc gagtcagcct aaggcccaca cctaggaagc
     3481 gctttcatga ctgtttatca tctttgtttg tcatgcattt ctacacattt ctggatactt
     3541 ctgacaggga tcatccaaga ctacagcatc tacctataat gaatgggaat aaagttattt
     3601 accaagaaaa tagaatatta agcacataaa ttctttctaa aacagggttg taatttatgg
     3661 tcattttaca gtgtaaatgc atgcttaagg aagccattta tcctgcttat tttctatgtt
     3721 aaccagcttc atttgtattt taaaccttac atttaaaaaa ttgtttatgg cacagtggat
     3781 aatgtcaaaa attaagatct gtctttcaag gagagatgca gttttgcaat caagttttgt
     3841 tgtcagtatt gaagatcacc tgcagccctt aaagatggcc attgattgtg ctcatgcatt
     3901 tcatatcaga attaatgaag ccaagtgcca tggttctgaa aaaaaaaaaa aaaaaaaaaa
     3961 aaaaaaa
//
