LOCUS       NM_026367               4565 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus G patch domain containing 2 (Gpatch2), transcript
            variant 1, mRNA.
ACCESSION   NM_026367 XR_104627 XR_107303
VERSION     NM_026367.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4565)
  AUTHORS   Dalseno,D., Anderton,H., Kueh,A., Herold,M.J., Silke,J.,
            Strasser,A. and Bouillet,P.
  TITLE     Deletion of Gpatch2 does not alter Tnf expression in mice
  JOURNAL   Cell Death Dis 14 (3), 214 (2023)
   PUBMED   36973252
  REMARK    GeneRIF: Deletion of Gpatch2 does not alter Tnf expression in mice.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4565)
  AUTHORS   Bailey,P.J., Klos,J.M., Andersson,E., Karlen,M., Kallstrom,M.,
            Ponjavic,J., Muhr,J., Lenhard,B., Sandelin,A. and Ericson,J.
  TITLE     A global genomic transcriptional code associated with CNS-expressed
            genes
  JOURNAL   Exp Cell Res 312 (16), 3108-3119 (2006)
   PUBMED   16919269
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC107843.10 and AC108796.10.
            
            On or before Jun 24, 2011 this sequence version replaced
            XR_104627.1, XR_107303.1, NM_026367.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC054810.1, AK029990.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-166               AC107843.10        77886-78051
            167-883             AC107843.10        87878-88594
            884-945             AC107843.10        93159-93220
            946-1128            AC107843.10        95506-95688
            1129-1208           AC107843.10        96122-96201
            1209-1276           AC107843.10        166705-166772
            1277-1316           AC107843.10        178899-178938
            1317-1387           AC108796.10        161400-161470       c
            1388-1476           AC108796.10        142179-142267       c
            1477-4565           AC108796.10        132309-135397       c
FEATURES             Location/Qualifiers
     source          1..4565
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1"
     gene            1..4565
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /note="G patch domain containing 2"
                     /db_xref="GeneID:67769"
                     /db_xref="MGI:MGI:1915019"
     exon            1..166
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /inference="alignment:Splign:2.1.0"
     CDS             114..1697
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /note="isoform 1 is encoded by transcript variant 1; g
                     patch domain-containing protein 2"
                     /codon_start=1
                     /product="G patch domain-containing protein 2 isoform 1"
                     /protein_id="NP_080643.4"
                     /db_xref="CCDS:CCDS15605.1"
                     /db_xref="GeneID:67769"
                     /db_xref="MGI:MGI:1915019"
                     /translation="MFGADGRPAIGTAAGKSWHFSRTMEELVHDLVSALEESSEQARG
                     GFAETGEHSRNLSCPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDY
                     REKHSNNKKDRSDSDDQMLVAKRRPSSNLSSSVRGKRLLWHESDFAVDSLGNRTLRRR
                     RKVKRMAVDLPQDVSSKRTMTQLPEGCRDQDMDNDRASQYPEFTRKKVKKRKLKGIRP
                     GPKTQEEGGVLESEERSQPNKDRMEYEEQKASDELRSESDTSSLSSTDAGLFTNDEGR
                     QGDDEQSDWFYEKESGGACGIAGVVPWWEKDEPAELDTNLPDPVFESILSGSFPLMSH
                     PGRGGFQARLSRLHGTPSKNIKKSSGAPPSMLSAPGPGSNKRMVHFSPDAHRHDHWFS
                     PGARTEHGQHQLLRDNRAERGHKKSCSLKTASRQTSMHLGSLCTGDIKRRRKAAPLPG
                     PTAAGIVGENAQPILESNIGNRMLQSMGWTPGSGLGRDGRGIAEPVQAVQRPKGLGLG
                     FPLPKSSPTSPAPTSGNPA"
     exon            167..883
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /inference="alignment:Splign:2.1.0"
     exon            884..945
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /inference="alignment:Splign:2.1.0"
     exon            946..1128
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1129..1208
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1209..1276
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1277..1316
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1387
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1388..1476
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1477..4565
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1939
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /note="major polyA site"
     regulatory      2743..2748
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /note="hexamer: ATTAAA"
     polyA_site      2763
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
     regulatory      2868..2873
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /note="hexamer: ATTAAA"
     polyA_site      2893
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
     regulatory      3822..3827
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
                     /note="hexamer: AATAAA"
     polyA_site      3848
                     /gene="Gpatch2"
                     /gene_synonym="5830433G22Rik; 5830436K05Rik; Gpatc2"
ORIGIN      
        1 ttccggaagt tgctctcaaa atgctgaagt cctgtgtgga attggccggg gctgcgggag
       61 ttggagtcgg tcctcgggcc tgagcctcga ggccgcgctc ccgggtgtcg ttgatgtttg
      121 gggccgacgg gcgcccagcg atcggaaccg ccgccgggaa gagctggcat ttcagtcgaa
      181 caatggaaga gcttgttcac gatcttgtct ctgcactgga agagagctct gagcaagccc
      241 gaggtggatt tgctgaaact ggagaacatt ctcgaaatct gtcttgccct ctgaaacgcc
      301 aggcccggaa aaggagaggg aggaagcgga gatcctacaa tgttcaccac ccgtgggaga
      361 caggccactg cttaagtgaa ggctctgatt ctagtttaga agaaccaagt aaggactata
      421 gagagaagca cagcaataat aaaaaggacc gcagtgactc tgatgaccag atgttagtgg
      481 cgaagcggag gccatcttca aacctaagca gcagcgttcg aggtaagcgg cttctgtggc
      541 acgagtctga ctttgccgtg gacagccttg ggaacagaac gctgcgccgg aggaggaagg
      601 tgaagcgcat ggccgtggat ctcccgcagg acgtctccag caaaaggaca atgacccagc
      661 tgccagaagg ctgcagagat caggacatgg acaatgatag agccagccag tatccagagt
      721 ttacccggaa gaaagttaag aaaaggaagt tgaaagggat taggccagga ccgaaaaccc
      781 aggaggaagg aggagttttg gagagtgaag aaagaagcca gcccaacaag gacaggatgg
      841 agtacgagga acagaaagcc tcggatgagc tcaggagcga aagtgacacc agcagtctca
      901 gcagcactga cgcgggcttg ttcaccaacg atgagggaag acaaggtgat gatgagcaga
      961 gtgactggtt ctatgagaag gagtcaggcg gagcgtgcgg gattgctgga gtcgtgccct
     1021 ggtgggaaaa ggatgagcca gcagagctgg acaccaacct gcccgaccct gtgtttgaga
     1081 gtatcttaag tggctccttc cctctcatgt cccatcctgg cagaggaggt ttccaagcta
     1141 gactcagtcg ccttcatgga acgccttcaa agaatattaa aaagtcttca ggggctccac
     1201 cttcaatgct gtctgctcct ggccctggca gtaacaagag gatggttcac ttctccccag
     1261 acgcccatcg ccatgaccac tggtttagcc ctggggctag gacagagcac ggccagcatc
     1321 agcttctgag agataaccga gcggaaagag gacacaagaa aagctgctcc ctgaaaacag
     1381 ccagcaggca gacaagcatg catttaggat ccttgtgcac aggagacatc aaaaggagaa
     1441 ggaaagctgc cccgttgcct ggacccactg cagcaggaat tgtgggtgag aacgcccagc
     1501 cgatcctaga gagcaacatc gggaaccgca tgcttcagag tatgggatgg acacccgggt
     1561 caggcctcgg gcgagatggc agagggatcg cggagccagt tcaagccgtt cagaggccga
     1621 aagggttagg acttggattt cctctaccaa aaagctcccc caccagccct gcccccacat
     1681 caggaaaccc tgcctgagca gagagagaac ctgcggtttc tgttgctgtg ccccattgtt
     1741 ataacatgat cgtagtgtgt actggtttga agccgacctc tgacgttgcc tccagctagc
     1801 ttccaggctg catagcgtcc cgccagtgat agaaatggga ttccatcaca actcacggtg
     1861 ctcaagtacg aacctcaacc cttcacgtgt ttcctcggtt tccagcagtt tctagacatg
     1921 aagaatagtt ggtctcttat ttattgtgat cctagacgtc agttctttct gctgccttgc
     1981 tccatccgtg cgtgtacgtg atgctcagac acagtggagc acacccagtg ggtctgagga
     2041 tcacattctt atgatgccga cactaagtag tgtggtcctc ctctctccca cgtgctccct
     2101 ctcccacatg cagggagtcc taagcatgtc cgggaaggct tgcttagtga gctcacttcc
     2161 ctttgctttg gctctgatga gggtttgtaa ctgggatgcc gttaactgtt ttcagcagtg
     2221 tagcataaat tcacagtggg atgtttggca agagctaacg ccgttgtcgt catcgtcgtc
     2281 atgagagcac tgtcagcatc actccagtgc agagcttaca caccttacct catttaggac
     2341 gtaaagtcat cgctaaaaga aaatgtattt ttaaagtcat cctgactgac ctgcaaaccc
     2401 tgccctccat atgtctacct ctccccaaag gctggggtta aggatcagct ccaagaggaa
     2461 gaagagtggc ctgctcaggg tttagtcact gaagtaaatt agtaaactcc tgagtcagtt
     2521 tgtttgaaga tataaatagc ttttcccaaa actgagctaa ctggcctaac ccacttacca
     2581 agtacagaag gaacagaggg accaggcatt ctgatactaa acacttagtt taaaattaag
     2641 cgaaacacta tgttccttcc attccattct gtcgttctct ccataaggtc agaaattcta
     2701 agttgttctt tgttcagaaa atactgattt attctaatgt tcattaaaaa accctaatta
     2761 ttattactta gaatggctcc tttgcttcag aaaaggttat gagaacccat actagtgtat
     2821 gcttgaacaa agcagtatga acttcaattt tgtaaattga aaaagaaatt aaaatattta
     2881 aggcaataga aaaggtttca gcaggttaac agacctttcc acgtatggtc ctctataaaa
     2941 aatgcagact ctgtagtctg gcaaacatct gcatttcttc taggaactgt ctttcctgag
     3001 aagtggccgt ggtaagaagt gggctggcca ggacacaagt ggaccccgtt tgtgcctcac
     3061 ggaacacttg tgttggggaa agcattgctg ctggaacaag ctcgtgacta gtaaactgcc
     3121 atttttaata gctgtctttc taaacgctta ccatattcac gtaggaggga agatcgaaga
     3181 gactaaccgt gtactggact caagggtctt ttccaaactt gtttgctctt ctttgagttt
     3241 catttcttga tggtcttgta aagccctagg aggggacttt taaatataag ctcaatttca
     3301 agccagcgag aaacagtgag gccactgaac gcttggctcc agtctccaga gaaatcagct
     3361 gctgtgtcct taccctgccc tagaggatgc acaggaacgg ccatgtgctg agcactgggc
     3421 ctccaaaact gctctctctg ggcacttccc atcactgccc tccagacaat gtgaaccctc
     3481 tgctgcagct tctgcagcaa ggtcctcacg agctgctggg acaccacagt tctactttca
     3541 cacaagaaag ctccttactc acagggttca tcttctacta gtgtttatct gttcagagtg
     3601 gatgaccagc tcttacagaa gaaccgacag gccccagccc accgccagct gtccacaggt
     3661 acccttcagc attcaagtcc ttataaagag cagcaagatg tgacgtccct ggcatacctg
     3721 accatagctg agaagtaaac acaattaaaa taggaaatgt tcatgtaaat cagatgtctg
     3781 ctcgggacat gaatcccact ggtttacatt taatagagat taataaatca ttatcagttc
     3841 aaatcagttc atggtgccca catcattgga gttcatgatt ttaactctat cattcctatc
     3901 acctttaaat agtcttaaga gatttcttct acttcctcat gagtccaccc tgttgttctg
     3961 caagccagtc agttagggtc tcttcccttc ccatccactc cctacggtag ccaaagaatc
     4021 ggagcatagc tgtgtcagca gtgtgactcc gcattgtgtg tctttaatgt caaccaggtg
     4081 tgggctgtag tcctttcctc ccttcttccc tcccctaaat agaatgtata aggctgaatt
     4141 cccttgaatt catttctttt tgtttttaaa tgatctagtg acttttaaag tgggcagcta
     4201 tgctaacacc cacccagaag ttggaagatt gaggcaggac tgccgtaagt ccaagaccaa
     4261 cctagactgt gtagtgagtt tcaggacaga tggtggcata tggtgatacc cgtgtcaaaa
     4321 gtaaatatca atggaaacca cgttagtaag tgccccttac ctggaaattg ggcaccgtgt
     4381 ttgagcacag cagtttggga ctggctgcaa tgattatgca gacagagttg agacagcagg
     4441 ttaaacatgc gtgcttgagt atgtgtgcac gcgggtgcac tgcagccgtg ttagtttgcg
     4501 gtggacagac aggattgaga ggttctgccc ttcattcatg tttaaccaaa aaaaaaaaaa
     4561 aaaaa
//
