LOCUS       NM_181649               4168 bp    mRNA    linear   ROD 06-AUG-2024
DEFINITION  Mus musculus G patch domain containing 11 (Gpatch11), transcript
            variant 1, mRNA.
ACCESSION   NM_181649
VERSION     NM_181649.7
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4168)
  AUTHORS   Lund,J., Chen,F., Hua,A., Roe,B., Budarf,M., Emanuel,B.S. and
            Reeves,R.H.
  TITLE     Comparative sequence analysis of 634 kb of the mouse chromosome 16
            region of conserved synteny with the human velocardiofacial
            syndrome region on chromosome 22q11.2
  JOURNAL   Genomics 63 (3), 374-383 (2000)
   PUBMED   10704284
REFERENCE   2  (bases 1 to 4168)
  AUTHORS   Kerr,S.M., Vambrie,S., McKay,S.J. and Cooke,H.J.
  TITLE     Analysis of cDNA sequences from mouse testis
  JOURNAL   Mamm Genome 5 (9), 557-565 (1994)
   PUBMED   8000140
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC151264.2 and AC154274.1.
            
            On Mar 28, 2022 this sequence version replaced NM_181649.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC092522.1, SRR17784643.890867.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-124               AC151264.2         9783-9906           c
            125-251             AC151264.2         8541-8667           c
            252-323             AC151264.2         7559-7630           c
            324-550             AC151264.2         6248-6474           c
            551-592             AC151264.2         5342-5383           c
            593-713             AC151264.2         4378-4498           c
            714-804             AC151264.2         4152-4242           c
            805-921             AC151264.2         3232-3348           c
            922-1003            AC151264.2         1561-1642           c
            1004-1320           AC151264.2         1-317               c
            1321-4168           AC154274.1         25958-28805
FEATURES             Location/Qualifiers
     source          1..4168
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 49.54 cM"
     gene            1..4168
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /note="G patch domain containing 11"
                     /db_xref="GeneID:53951"
                     /db_xref="MGI:MGI:1858435"
     exon            1..124
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /inference="alignment:Splign:2.1.0"
     exon            125..251
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /inference="alignment:Splign:2.1.0"
     exon            252..323
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /inference="alignment:Splign:2.1.0"
     CDS             265..1059
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /note="coiled-coil domain-containing protein 75;
                     coiled-coil domain containing 75"
                     /codon_start=1
                     /product="G patch domain-containing protein 11"
                     /protein_id="NP_857632.4"
                     /db_xref="CCDS:CCDS28979.1"
                     /db_xref="GeneID:53951"
                     /db_xref="MGI:MGI:1858435"
                     /translation="MKESMTEEEDYMSDSFINVQEDVRPGVPMLRQIREARRKEEKQQ
                     QANLRNRQKSVKEEERERRDIGLKNALGCENKGFALLQKMGYKSGQALGKSGDGIVEP
                     IPLNVKTGKSGIGHESSLKRKAEERLENYRRKIHMKNQNEAKAAEEFRMRLKSKQDEM
                     RLEGDLRRSQRACQQLDAQKNIQVPREAWYWLRPEEETEEEEEEKEEQDEDECPSEDL
                     SVLEKLQILTGYLREEHLYCIWCGTAYEDKEDLSSNCPGPTSADHD"
     exon            324..550
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /inference="alignment:Splign:2.1.0"
     exon            551..592
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /inference="alignment:Splign:2.1.0"
     exon            593..713
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /inference="alignment:Splign:2.1.0"
     exon            714..804
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /inference="alignment:Splign:2.1.0"
     exon            805..921
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /inference="alignment:Splign:2.1.0"
     exon            922..1003
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..4168
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1149..1154
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /note="hexamer: GATAAA"
     polyA_site      1176
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /note="major polyA site"
     regulatory      1194..1199
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /note="hexamer: AATACA"
     polyA_site      1222
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /note="major polyA site"
     regulatory      3250..3255
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /note="hexamer: AATAAA"
     polyA_site      3272
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
     regulatory      4145..4150
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
                     /note="hexamer: AATAAA"
     polyA_site      4166
                     /gene="Gpatch11"
                     /gene_synonym="2310002B06Rik; Ccdc75"
ORIGIN      
        1 ctccgcggag ctggttccgg gcagtaaagc tccggcttca gggtgtgcgg gcgctcagga
       61 gaatgacaga ggtcggtgca agttggctgt gactgcctat cacagcgtca gctacgcccc
      121 atccgaacaa gatcaccaag acttgtattc tttgtggttg tgaaccaatt atttagccac
      181 attgagcctc agttttccct gctggaaagt ggaactaata cttcttatct actgggctgc
      241 tcctaagcta ggtagtgttg tcagatgaag gagagcatga cagaagagga ggactatatg
      301 tcggattcct tcattaatgt tcaagaagat gtcagacccg gtgtgccgat gctgaggcag
      361 atccgagaag cccgtcggaa agaagaaaag caacagcaag ctaatctgag aaacaggcag
      421 aagagcgtaa aagaagaaga gcgggaaaga cgtgacatcg ggttgaagaa tgcactcggc
      481 tgtgaaaaca aagggttcgc tctgctccaa aagatgggat acaagagtgg gcaggctcta
      541 ggcaagagcg gagatggtat tgttgaacca attcctctca atgtcaaaac aggaaaaagt
      601 ggcataggtc atgagtcatc attaaaacgg aaagcggagg agaggctgga aaactacagg
      661 agaaaaattc acatgaaaaa ccaaaatgaa gcaaaggccg ccgaggagtt tcggatgcga
      721 ctgaagagta agcaggatga aatgaggctc gaaggagacc tgagaagaag ccagcgagct
      781 tgccagcagc tggatgccca gaagaatatt caggttccca gggaggcgtg gtactggctg
      841 aggcctgaag aggagaccga ggaagaggaa gaggaaaagg aagaacagga tgaagatgag
      901 tgcccgagtg aagatttgag tgtgctagaa aagctgcaga tcctcactgg ctacttgcga
      961 gaagagcacc tgtattgcat ttggtgtggg acagcctatg aagataaaga agacttatct
     1021 tcgaattgcc caggaccgac ctctgcggat cacgactgag attgttccca ataaagggaa
     1081 atcatttacg tgagtgggga aaggaggcct ttgtatagca ctttattctt tctgaaatgt
     1141 gttctttgga taaaactgct cactgattta gaaaaatgtt actcttactt ccaaatacaa
     1201 ctatcataga catgaacagt tacaagtgat gtggcattgt gacgtttgtc cagtttaagg
     1261 gtaccaacag gttacgtact cagtcccctc cttactttgg ataaattgag aagtaagatc
     1321 ggaatcagga agaagccagt tgtctgcttt agccttgcga tgcacctgta tggtagaggg
     1381 cctgcctagc ctgtgcagga caggatcctg agttcagccg ccagcacaag ctaagctcat
     1441 tggcgtgaag ctggaatcca ggacaaggcc agctctttct aaccaaacta cctaagagta
     1501 atttggagaa atggcacgcc cggcctctgc tgtggagtct gctttgtgtt ctagaactgg
     1561 tgtcttgaag tagttttatc ctgatttgtc tttcaacata gctgttgaga ataccagata
     1621 gcattttcta ggcgctagtt ctctggagta aagagcacac cactggctga gtagtctgtc
     1681 agattaaaac acttctctgt tggaaaggaa ggaatgaaga gtcagaggat tccatacttc
     1741 tgggtcatgt ccagggtcag acctcaaagt catgggtgtt tttccaagtg tgcatgctca
     1801 aggatcccct ctagtggacc catctgaact ggtcagtact taaataccca ctttttaaac
     1861 tccaagagta tgcggcagca tgcgttgctt tctgaaacac cacaccatca caagggaaaa
     1921 cgttccagag gagtgcctga agggacgcaa agtggtcagc acagtgcagc ccggatcagc
     1981 gggaggacta gagccaactt accctgggtg accaggcaac atccctgtgg cactacacta
     2041 cactgtggtg accaggcgac atcccagtgg cactacacta tgctctgggt gaccaggcga
     2101 catcccagtg gcactacact acactctggg tgaccaggcg acatcccagt ggcactacac
     2161 tacgctctgg gtgaccaggc gacatcccag tggcactgca ctacgctgtg ggtgaccagg
     2221 cgacatccca gtggcactac actacgctgt gggtgaccag gcgacatccc agtggcactg
     2281 cactacgctg tgggtgacca ggcgacatcc cagtggcact acactacgct ctgggtgacc
     2341 aggcgacatc ccagtggcac tacactatac tctgggtgac caggcgacat cccagtggca
     2401 ctacactaca gttaggatta aagtcagtgc tggtataact gtacctatct aaaccatggg
     2461 gacaccacga gtcacttcct gggtatggca ttccacagac atatgactag ttcctcaagc
     2521 aaatgttgag agtaaagaaa acacatggag tatgccgtca agtaaaagga catgtcaccc
     2581 aaaagtaacc gtggatcttc ctgattttta agattgtaaa ctgaatttgg actaattatg
     2641 tgaaaattat acttcttagt ttgtctgaga aacagtggta tatgattttg ttactgttac
     2701 aaagaactta cctattacaa gtcaactttt aaatatttat agggggttgg caagatggat
     2761 cagtgggtaa gaacactgac tgctctacca aaggtcctga gttcaaatcc acatggtggc
     2821 tcacaaccac ctataatgag atctgatgcc ctcttctgat gtgtctgaag acagcaacag
     2881 tgtacttaat tataataata aatatatctt tcggcctgag caagcagagt tgaccggtcg
     2941 agcgtggtgg ggccgaccag agggagcagg gttgaccaga gcaaacaaaa gccctaaaaa
     3001 ttcaattccc aacaaccaca tgaaggctca catccatctg tacagctaca gtgtactcac
     3061 atacataaat cttttaaaaa aaaaaaaaga atgacagcct aaatatttat ggctacaact
     3121 gaggagctca gcataacaac aaaggtaaaa tatttgttaa ggctgcacaa tgatatatat
     3181 acagactcac tcttgggtgt ttgaagatga aaattgtgag gattaatatt gaacaaaaat
     3241 attccttaca ataaaatgtt aatgtgcctc gagttctggt gaccattcaa gtaggaatgt
     3301 ttgttatgtc tgactagtga gtctgcagat ggtggagact tggagaagct gacagtcaga
     3361 catgcatgta gctatgtaca caaggtacac ttaatgggca tgcagcccgt acagttgcat
     3421 aagaccatgc aactgtccca cacttagcct ctgaaaaagc accctatatt gcattttaaa
     3481 ctgggtgcca ccattatgca accaaccata catgtatata ataacataaa tatatgtgtg
     3541 tatggataga ttatgactat atctgatata gttatattac atctacaggt atgtgtttgt
     3601 gacatatatg tatttaatag aaatgatata tttactcgga taaaaatttc ctagtgaagc
     3661 caccaggtaa aaaagtttct ttcaaaagtg cccctggcat gagtaagtga ggctctactc
     3721 tgccctgctg ttccctgagt aagatacttg ggatttcctg gtttggaggc tgagaaaata
     3781 tatccttaga agtacataaa aatgccaaaa agataacata catatttcat aatgtaaaaa
     3841 taccagtaag agaagggtaa aatgttatac tctccctgac catattattt tggtattcct
     3901 cttaaataga ggaatttgtt catcaaagct aatattagtc tgttttcaaa gaaatttcaa
     3961 agaaatttga aaaatgtagg ccaaatacct acgtatcttc atttctatgt ggcagtggct
     4021 aacatctccc acagctgctc tctctttctt ctttctctgt aactctagct ccagggcatc
     4081 tgatgcccta ttttggcctg ggctgtcact acgctcacat acaaagacat ggacatgcaa
     4141 ataaaataaa tattttttta aaagaata
//
