LOCUS       NM_027694               2830 bp    mRNA    linear   ROD 02-JUL-2024
DEFINITION  Mus musculus golgin A7B (Golga7b), transcript variant 2, mRNA.
ACCESSION   NM_027694 XM_203553
VERSION     NM_027694.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2830)
  AUTHORS   Woodley,K.T. and Collins,M.O.
  TITLE     S-acylated Golga7b stabilises DHHC5 at the plasma membrane to
            regulate cell adhesion
  JOURNAL   EMBO Rep 20 (10), e47472 (2019)
   PUBMED   31402609
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK139354.1, BC049116.1 and AI839934.1.
            
            On Nov 22, 2008 this sequence version replaced NM_027694.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049116.1, AK139354.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1163              AK139354.1         2-1164
            1164-2800           BC049116.1         1120-2756
            2801-2830           AI839934.1         10-39               c
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 36.01 cM"
     gene            1..2830
                     /gene="Golga7b"
                     /gene_synonym="4933417O08Rik"
                     /note="golgin A7B"
                     /db_xref="GeneID:71146"
                     /db_xref="MGI:MGI:1918396"
     exon            1..445
                     /gene="Golga7b"
                     /gene_synonym="4933417O08Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             434..937
                     /gene="Golga7b"
                     /gene_synonym="4933417O08Rik"
                     /note="golgi autoantigen, golgin subfamily a, 7B"
                     /codon_start=1
                     /product="golgin subfamily A member 7B"
                     /protein_id="NP_081970.1"
                     /db_xref="CCDS:CCDS29827.1"
                     /db_xref="GeneID:71146"
                     /db_xref="MGI:MGI:1918396"
                     /translation="MATEVHNLQELRRSASLATKVFIQRDYSDGTICQFQTKFPPELD
                     SRIERQLFEETVKTLNGFYAEAEKIGGSSYLEGCLACATAYFIFLCMETHYEKVLKKI
                     SRYIQEQNEKVFAPRGLLLTDPVERGMRVIEISIYEDRCSSGSSSSGSSSGSGSSSAG
                     GGGAGAR"
     exon            446..571
                     /gene="Golga7b"
                     /gene_synonym="4933417O08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            572..724
                     /gene="Golga7b"
                     /gene_synonym="4933417O08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            725..826
                     /gene="Golga7b"
                     /gene_synonym="4933417O08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            827..2823
                     /gene="Golga7b"
                     /gene_synonym="4933417O08Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1589..1594
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Golga7b"
                     /gene_synonym="4933417O08Rik"
                     /note="hexamer: AATGAA"
     polyA_site      1611
                     /gene="Golga7b"
                     /gene_synonym="4933417O08Rik"
                     /note="major polyA site"
     regulatory      2794..2799
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Golga7b"
                     /gene_synonym="4933417O08Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2816
                     /gene="Golga7b"
                     /gene_synonym="4933417O08Rik"
ORIGIN      
        1 gcgggcgggg ctcctctccg gcgggtgccg gagtctgggg gccgcggctt ccccctcccc
       61 gcccgccgag gcgctggccc ctccttcccc cgccgccccc gtgcccgccg ctgctgccac
      121 tgtcaaagat aaaaccgggc cattgcctgc aggaaccctg gcagcaggcg atcgggtggt
      181 gaggagcctc cggcgcggcc tcgcctcccc ggtccggctc ccgcgtcagc accgtggaca
      241 gcacggacca cctttcaggg accctccggt cggcaggagc gcgcttcagg tttcggcgat
      301 ctcatcagta ccgcggacag cgcccaggcc ctcgctggcc tcggccagcc caccggctct
      361 tcctatcagc accgcggaca gcccccctga accagcccag cgacagccaa ggactggtca
      421 gaacgccctg aagatggcca ctgaggtcca caatcttcag gagctcaggc gaagcgcttc
      481 gctggccacc aaggtcttta tccagagaga ctacagtgac ggcaccatct gtcagttcca
      541 gaccaaattc ccgccagagc tggatagccg gattgagcgg cagctctttg aggagacggt
      601 gaagaccctc aatggttttt atgcggaggc tgagaagatc gggggcagct cctatctgga
      661 gggctgcctg gcctgcgcca cggcctactt catcttcctc tgcatggaga cccactatga
      721 gaaggttctc aagaagattt cccgttacat ccaggagcag aatgagaagg tctttgctcc
      781 ccgagggctc ctgctcacgg atccggtgga acgcggaatg agggttatcg agatctccat
      841 ctatgaggac cggtgcagca gtggtagttc cagtagcggc agcagcagcg gcagcggcag
      901 cagcagcgct ggcgggggag gggcgggggc ccggtgactg gccgagagtc cctgtaggga
      961 ggtgtacagc cggagcgagg ggctggcaga tctacggagg ctgcgctacc agagcacccg
     1021 cttctgagtc tttctctggg cccaccctgc catgtggtgc ggaagggagg gtgcctgccc
     1081 gctgttccct gtccccagac ctttgctcct tggcaggatc ttcttctttc tgaccctgga
     1141 cctttttttt tttttttttt tttctcccat gaggctgatc tgagtcatca gacccagacc
     1201 gtcctaggat gtctggggtg ggggtggggg acccagcttg gacaaaccct atctttcctg
     1261 cctccttcct cactctaagg agggcctgga gaattcccac cctgcatgat acttcaccct
     1321 caaagactct ttctaaggcc caacgctact atgggctcct gcttgtcagt ggtcccatct
     1381 cttcactgga gatctgggga gatgggtgcc ctgggagcta ttcagccgct ccaaaggcag
     1441 tgactttcct gtcctcagag ccgaaagttc tctcagcctt gccaagaagc acccaactct
     1501 gagactttgc accccaccag gaactgattt taggggttca gcctaggact ctgatgggct
     1561 ccactggggt atgggaaaac tttggacgaa tgaagctgga cagagcttga actcctgaac
     1621 tggatccaat tcctgcatcg tgtgcataca tgtggagtgc actgtgtgcg caaatgtatg
     1681 tatgtatttg tatgggtggc taagcatgta cacatgtgag caaacaaggg tatgaatatg
     1741 agtgcctgta tatgtatgac tgcacaagtc aatgtgtgta tgtgcacatg tgcgtgaacc
     1801 tatgtttatc tgagtgaatg agggagaagg taagtgcatg tgtgcaacac gtgcatgcaa
     1861 attatgtatg cgtgtgcaca agtgtattgc gtgagtatac atgtctatgt gtaagtatgc
     1921 atgtgtttgt gtgtgtgtgt ggggagagag agagagagag agagagagag agagagagag
     1981 attcggttgt gtcgttgtgt gttctctttg gctgctgggc taatgactac tgagtcctgc
     2041 cccatcctgt ctcacattgg tctgcagagc ctctctgtga gtccctcctg gccctctgta
     2101 agtcaatgtt ctaaagctgg gctgtcagct tggctcttcc tcttggcctt tctcccacct
     2161 ctggctctat tgtacacatt ctgatggagg gattgttggg ctcccaggag aaccaagcca
     2221 gcgtttaggt ggtctttggt gcccctctcc cagcccccat ggcacagtgg ggccacagat
     2281 gctgcatatt cagcctgccc aggtgtcagg accctgaggc ccttgtagat gaagcttccc
     2341 cggacattca aggcaaatgt gccttgcgag gaaaagcgaa tggagccatg gctccctagg
     2401 ggagctaagt tgaaggtgat gcatcctggg gccttaagat ggacagaaag gggctgccta
     2461 cctcagcggg caggaggtgc tagaactaga caggaatcac cagccactat cagcagcttc
     2521 ctggagctga aagggcctgt ctctctacag caggagactg tgctgcggat ggagagggct
     2581 ggccaagccc ctgacgcctc agggtgcccg agccccatga gccctggtgc aatgaacccc
     2641 ttctttccga gctgcagccc ccgatcccct gcagaagcct gtgccctctg tagcctgctg
     2701 tgcagccagg cgtcctgtct gactttgcac agcctgttgg gaaggttggg aagaggcaaa
     2761 atggagggag accttttgtt ttattctgtt cccaataaaa ggacttgcca gcttgaggct
     2821 ccaaaaaaaa
//
