LOCUS       NM_001081746            1621 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus predicted pseudogene 7609 (Gm7609), mRNA.
ACCESSION   NM_001081746 XM_976505
VERSION     NM_001081746.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Traut W, Rahn IM, Winking H, Kunze B and Weichehan D.
  TITLE     Evolution of a 6-200 Mb long-range repeat cluster in the genus Mus
  JOURNAL   Chromosoma 110 (4), 247-252 (2001)
   PUBMED   11534816
REFERENCE   2  (bases 1 to 1621)
  AUTHORS   Weichenhan D, Kunze B, Winking H, van Geel M, Osoegawa K, de Jong
            PJ and Traut W.
  TITLE     Source and component genes of a 6-200 Mb gene cluster in the house
            mouse
  JOURNAL   Mamm Genome 12 (8), 590-594 (2001)
   PUBMED   11471051
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC164544.4 and AC123856.4.
            
            On Feb 28, 2007 this sequence version replaced XM_976505.1.
            
            Summary: This gene is one of several duplicated genes in a repeat
            cluster in the homogeneously staining region (HSR) of chromosome 1.
            It is an Sp100-rs gene copy, which arose by duplication following
            the fusion of the Csprs (component of Sp100-rs) gene and the 5'
            part of the Sp100 (nuclear antigen Sp100) gene. The coding sequence
            of this gene is intact compared to that of the Csprs gene, and
            therefore NCBI represents this as a protein-coding gene. However,
            it is also possible to interpret this fusion gene as a pseudogene
            of the Sp100 gene. It is unknown if this gene produces a protein in
            vivo. [provided by RefSeq, Mar 2011].
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC059276.1, BF537368.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-112               AC164544.4         12093-12204         c
            113-281             AC164544.4         9507-9675           c
            282-475             AC164544.4         3618-3811           c
            476-1621            AC123856.4         92405-93550
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 43.45 cM"
     gene            1..1621
                     /gene="Gm7609"
                     /gene_synonym="EG665378"
                     /note="predicted pseudogene 7609"
                     /db_xref="GeneID:665378"
                     /db_xref="MGI:MGI:3644536"
     exon            1..112
                     /gene="Gm7609"
                     /gene_synonym="EG665378"
                     /inference="alignment:Splign:2.1.0"
     exon            113..281
                     /gene="Gm7609"
                     /gene_synonym="EG665378"
                     /inference="alignment:Splign:2.1.0"
     exon            282..475
                     /gene="Gm7609"
                     /gene_synonym="EG665378"
                     /inference="alignment:Splign:2.1.0"
     exon            476..1621
                     /gene="Gm7609"
                     /gene_synonym="EG665378"
                     /inference="alignment:Splign:2.1.0"
     CDS             499..1389
                     /gene="Gm7609"
                     /gene_synonym="EG665378"
                     /codon_start=1
                     /product="component of Sp100-rs-like"
                     /protein_id="NP_001075215.1"
                     /db_xref="GeneID:665378"
                     /db_xref="MGI:MGI:3644536"
                     /translation="MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTVVIIAIVS
                     QSLQLRKEVPLVLLCHHLLCISSYCGLGVVFQGMRALLANSPLLLCWLVFGAQLSVGE
                     GILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPT
                     PASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKWAGHFNKSNIK
                     ARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNHLVYGLH
                     NRDLQSKLYPWLCCRKKLLP"
ORIGIN      
        1 ctgtggccca cagcaaacac acagaagcct gtgcagacac caagggatca gagctcactg
       61 tcccaggccc caggcagctg tggaagatgg aagggagcaa cggcagcccc aggatttgct
      121 agattcctgt agatcgctgg tccctgtgga caaagtgatc tacagagccc tggaggaact
      181 ggagaagaaa tttgacatga cggtactgtg cgaattgttc aatgaggtca acatggagaa
      241 gtaccccgat ttgaatctca ttcgtagaag ctttgaatgt gatgcctctg tgtgacactg
      301 gctgcagacc cgtggaagta gctcctgagt ttgatggctc agggaacttg gttccagctg
      361 tgaggcactg gccatcaggg gctcttccta ggacttgcta ccatttccaa tacctcttcc
      421 tagaaaacac actcactcac tggtggttgg atcagaaagg atctctgttg gcaaggagcc
      481 aagccagccc tgaagaccat gaactcgtct tctgagcatt gcaacgtatc tgactggctg
      541 agactagagg caaccgtgaa ggcctctgtg tacgtggtgg ctttctcaat caccacatct
      601 ctcaccgttg tcattatcgc aatagtgtca cagagtctgc agctgaggaa agaggtgccg
      661 ctggtcctcc tctgccatca cctgctttgt atctcctcct actgtggcct gggggtcgtc
      721 ttccaaggaa tgcgggcctt actggccaac agccccctcc tgctgtgttg gctggtattt
      781 ggggcgcagc taagtgtggg agaagggatc ctccttactc tgaccttgat ggctctcaat
      841 acttacctcg ctatttgtta tccattgaac tctccatcct ttgtggattc tgctaagtac
      901 aggattctag ctgggacttg gaccacggtt atactcaaga atgttggctt attcctcata
      961 gagggtacta gccctactcc ggcctctgtt ttccagtctg ccccactctg tcctgtgatt
     1021 ttgaatggta tgcctgccag agtcattggc atgttttccc ttgcctttct tttatccgtc
     1081 attcttgtga gttactgtct gatataccga gaagggaagt gggctggcca ttttaacaag
     1141 tcaaacatca aggcccggag aactgtcctt gttcatctac tgcagataag cttacatgtg
     1201 atacctaccc tgataatcat aggtttggga aagcggtgtg gggtgttttt ctttgctcta
     1261 aatctggccc tttttggtat cttcgctttt gcacagtgtt tcaaccattt ggtctatggg
     1321 ctccacaaca gagatctgca gagcaaactg tacccttggc tgtgctgtcg gaagaagctg
     1381 ctgccttaaa aaagaagggg ctggggcata tgaatcaaaa gatggcctag tcggccatca
     1441 cttgaaagag aggcccattg gacacgcaaa ctttatatgc cccagtacag gggaacacca
     1501 gggccataaa aggggagtgg gtgggtaggg gagagggggt gggtggctat gggggacttt
     1561 tggtatagca ttgcaaatgt aaatgagcga aatacctaat aaaaaatgga aaaaaaaaaa
     1621 a
//
