LOCUS       NM_001374215             977 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus predicted pseudogene 5947 (Gm5947), transcript variant
            1, mRNA.
ACCESSION   NM_001374215 XM_017318682
VERSION     NM_001374215.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX005465.14.
            
            On Sep 13, 2019 this sequence version replaced XM_017318682.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                BX005465.14        77548-77606         c
            60-170              BX005465.14        76227-76337         c
            171-977             BX005465.14        73292-74098         c
FEATURES             Location/Qualifiers
     source          1..977
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 72.38 cM"
     gene            1..977
                     /gene="Gm5947"
                     /gene_synonym="EG546397"
                     /note="predicted pseudogene 5947"
                     /db_xref="GeneID:546397"
                     /db_xref="MGI:MGI:3648189"
     exon            1..59
                     /gene="Gm5947"
                     /gene_synonym="EG546397"
                     /inference="alignment:Splign:2.1.0"
     exon            60..170
                     /gene="Gm5947"
                     /gene_synonym="EG546397"
                     /inference="alignment:Splign:2.1.0"
     CDS             142..855
                     /gene="Gm5947"
                     /gene_synonym="EG546397"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="uncharacterized protein LOC546397 isoform 1"
                     /protein_id="NP_001361144.1"
                     /db_xref="GeneID:546397"
                     /db_xref="MGI:MGI:3648189"
                     /translation="MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLSAFMLEVLIASI
                     LSWRLWEFDSNAVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQ
                     NLIVLAILMKPVVLVFCVIAIKISCTKNPLVEMQIYCYKISALILSVSSMFAFVSVIW
                     NHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDL
                     KLKRPVKANDASKMGLLDA"
     exon            171..977
                     /gene="Gm5947"
                     /gene_synonym="EG546397"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aatgtgagtc tcttacactg ggcagtcact aacatttgca cttcaatgaa aagataaagg
       61 tgattcacct cctttgggac tccatttctg ttcaacattt cctgtgaatt caaagatatt
      121 catgatcaca gcatctttca aatggatcaa ctcatcgttg atactcggag tgtcatctac
      181 agatttatca atgagaagga ctgcatctac aagctgagcg gcctccttag cagcttatca
      241 gctttcatgc ttgaagtact cattgcaagc atcttatcct ggcgcctatg ggaatttgac
      301 agcaatgctg tgcagtttgt gtcctttggc ctgtttgaag cttattaccc tcagcagttt
      361 aacatctctg gaacactaac caagatgctg gtatacaccc ctattgattc aacttggaac
      421 atttcaactg aatttatgta tgcacagaac ctgatagtat tggccatttt gatgaagcct
      481 gtggttctgg ttttctgtgt aatagccatt aaaatcagct gcacgaagaa cccactagtg
      541 gagatgcaga tatattgcta caagatctct gccttaattt tgtctgttag cagcatgttc
      601 gcatttgttt ctgtgatctg gaaccacatg gtagattttt atggccacac cactcttgac
      661 tttccatctg attttcctgt taagaaagaa gctttaacaa gcaaacattt aactgtggtg
      721 ttaccagtag gcctccttat agccaccatg tcactctttg gtgtgatcat gtttctctct
      781 gagataagcg atttgaaact aaagcgtcct gtgaaggcca atgatgcttc caaaatgggc
      841 cttctagatg cgtgaagtga taagttttgg atttccaaca tttgtgagaa tgttctttaa
      901 gaagtttcct attcctacag gaaactcatg tagttctcaa ctcattttaa ataaatttgt
      961 tctataccaa gcatcaa
//
