LOCUS       NM_001382419            1155 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus predicted gene 5901 (Gm5901), transcript variant 3,
            mRNA.
ACCESSION   NM_001382419 XM_006507136
VERSION     NM_001382419.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC125055.3.
            
            On May 6, 2020 this sequence version replaced XM_006507136.4.
            
            Transcript Variant: This variant (3) encodes the longest isoform
            (3).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.39779.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-132               AC125055.3         154521-154652       c
            133-931             AC125055.3         151793-152591       c
            932-1155            AC125055.3         151313-151536       c
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 55.84 cM"
     gene            1..1155
                     /gene="Gm5901"
                     /gene_synonym="EG545989"
                     /note="predicted gene 5901"
                     /db_xref="GeneID:100503879"
                     /db_xref="MGI:MGI:3643909"
     exon            1..132
                     /gene="Gm5901"
                     /gene_synonym="EG545989"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..1065
                     /gene="Gm5901"
                     /gene_synonym="EG545989"
                     /note="isoform 3 is encoded by transcript variant 3"
                     /codon_start=1
                     /product="uncharacterized protein C11orf42 homolog isoform
                     3"
                     /protein_id="NP_001369348.1"
                     /db_xref="GeneID:100503879"
                     /db_xref="MGI:MGI:3643909"
                     /translation="MLVSSPHLLTLDEADATWALIKDKVIEERFGSNVVAVPFLSDAA
                     YYDLLGVLVKQSRPAHTRLALPGRQGRRALKSVGLLPNLLEQAGSEGIFAHCTREYSP
                     NGRAETAYEEMRMMDGQPCRIRLHMGGLRKKVAFLLLPPGQVSLQQNLPWLRSTHSIY
                     VIYQVFSCTWLQLGLLPTAREPQLIRLQRSLPIAFSCLKFSLQPKGVLGPQKSLTKDP
                     LPQGANWVRPSLSIISTLAPTSVSADTHEVADVPPPVPAPPTPPPQEGPEGRPTRFSH
                     KGRNPFRRGPYMLSAENWLFSPRNPPPGAQGGGPGDPDRHSMSLPLLQGLSSEFDSDE
                     "
     exon            133..931
                     /gene="Gm5901"
                     /gene_synonym="EG545989"
                     /inference="alignment:Splign:2.1.0"
     exon            932..1155
                     /gene="Gm5901"
                     /gene_synonym="EG545989"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcagcttg ggggttcctg cagcagccac taccttgccc aacccctccc actccccacc
       61 atgttggtca gtagccccca cctgctaaca ctggatgaag cagatgccac ttgggccctc
      121 atcaaggata aggtcatcga ggagcgtttt gggtccaatg tagtggcagt acctttcctg
      181 tcggatgcag cctactatga tctactgggc gtgctagtga aacagtcccg tccagcccac
      241 acccgcctgg ctttgccagg tcggcagggc agaagggcac tgaaatcagt agggctgcta
      301 ccaaatcttc tagaacaggc agggtctgag ggtatctttg cccactgcac acgggaatac
      361 tcaccaaatg gccgagccga gacagcctat gaagaaatgc gaatgatgga tgggcagccc
      421 tgcaggattc gcctacatat gggaggtctg cgcaagaaag ttgctttcct gctgctacca
      481 ccagggcagg tgagcctaca acagaatctt ccctggctcc gaagcaccca cagcatctac
      541 gtcatctacc aggtcttctc ctgcacctgg ctgcagctag ggcttttgcc tacagcccgt
      601 gaaccccagc tgatccggtt acagcggtca ctacctattg ctttctcctg cctcaagttt
      661 tcactgcagc ccaagggtgt gctgggacca cagaagtctc tgaccaaaga cccattgccc
      721 caaggagcca actgggttag acctagcctt agcatcatat caactctggc ccccacatca
      781 gtatctgctg atacccatga agttgctgat gtacctccac ctgtcccagc cccacctaca
      841 ccacctcccc aagaagggcc agaaggcaga cccaccagat tctcccataa gggtcgaaac
      901 cccttccgga ggggccccta tatgctttca gcagagaact ggctcttcag cccccgcaac
      961 cctccaccag gagcccaggg tgggggcccc ggggaccccg accggcactc catgtccctg
     1021 cccctgcttc agggtttgtc ttcggagttc gacagcgacg aatgaagctg aggcaagaga
     1081 tgcaggggcc aaggccctta agatctggca tagggatact ggtccccaat aaacatcaac
     1141 tgctgcagcc ccaaa
//
