LOCUS       XM_036163497            4347 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus predicted pseudogene 5848 (Gm5848), mRNA.
ACCESSION   XM_036163497
VERSION     XM_036163497.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4347
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..4347
                     /gene="Gm5848"
                     /note="predicted pseudogene 5848; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     long SRA reads, 20 Proteins, and 78% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:545531"
                     /db_xref="MGI:MGI:3648047"
     CDS             1356..1712
                     /gene="Gm5848"
                     /codon_start=1
                     /product="small nuclear ribonucleoprotein Sm D2-like"
                     /protein_id="XP_036019390.1"
                     /db_xref="GeneID:545531"
                     /db_xref="MGI:MGI:3648047"
                     /translation="MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLSQSVKNNTQVLI
                     NCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKSKPVNKDCYISKIFLR
                     GDSVIVVLRNPLITGK"
ORIGIN      
        1 ttttttttta accctttcta atttaccttt aatattgcgc tatcataaat ataaactata
       61 ctatatttat ttacttactt gtagaatgta agttcacaga agcacccttt tgatttgctt
      121 ttgtctacta aagtatctct ggtatttagc acaggaccta tttcttcaag aagatgaaga
      181 aacctgcttt gtgtgaagac atttaagcac ttctgtctag atcaacatca attgtctctc
      241 ctcctccatg aagagagagc acacataatc tatacctgat gtcaagagag gcattgagaa
      301 agaacatgag tgaccagaaa gaaagtggac aaaccagtgg cctaggtgaa gtccaggtga
      361 gtgtcagtgc ctcgttacaa gtgtgacaac ctgtgttctt caacagacct ctcagatggg
      421 tgcagtgtgt ggcataggaa tctgaaatcc atctagatga ggagctctga gtacatcaca
      481 tagactaatc aaaatgccgt gtgttctcac cagctccagc cgatgagagg acgtgagcca
      541 tgctagccag ctcttaggat gtggggtgct ggcatcttac ctttaagccg agcacggggg
      601 actgggtgtg accttgattg tttggctgct taattcagct tctaagaatg ttatagaaca
      661 acatagcata cttggaaaaa gtaggagaaa ccacctctta aagctgagca tgcatggagt
      721 catgatccag caatcccctt atgaggtaca cacataagag aaaagtgtgc tgtgtactct
      781 gcatgctgtg tatgagggta tagcaatgtg tgagctggtt ccaaatcctg ggactgggca
      841 ctcacattga taggaataat catttgctag gttaatgtta aagtcataat atcgagtgaa
      901 agaagagttc acagagtcaa aaataatgta tggtgctaaa attcaagacc cttcccatgg
      961 gtggaggtgg gaagcactga acagacataa agcacagtga gtttctgggc tgctgatgtg
     1021 gattttccat tgtgaagact catctgtctg tgtgctcaca gctcacacac ctgcatggca
     1081 gtgaggcggc tgggtcaatt ctctggtgtt cggtcaggta tcagtaggcg cggaacgtgg
     1141 aagtctgaca gagaaatctg gggggatgag gcagatcagg ctgcatcact gaaggagtag
     1201 tgaaaggtga cgtcaggaaa gcatgtggtt tgtcagagaa ggctgccgag gcttgacggg
     1261 gacagggata aatgttacat attagggatg gaataaagta tgtgggcaga tgtcagaaat
     1321 ctgggcggga gtgatctgcg agcgaaacct acaccatgag tctcctcaat aaacctaaga
     1381 gtgagatgac cccagaggag ctgcagaagc gggaggagga ggaattcaac acaggtcccc
     1441 tctcagtgct ctcgcagtcg gtcaagaaca acacgcaagt gctcattaac tgtcgcaaca
     1501 agaagaagct gctgggccgg gtgaaggcct ttgacaggca ctgcaacatg gtgctggaaa
     1561 atgtgaagga gatgtggact gaggtcccca agagcagcaa gggcaagaag aagtccaagc
     1621 ctgtcaacaa ggactgctac atctccaaga tattcctgcg tggggactcg gtcatcgtgg
     1681 tgctgcggaa cccgctcatc actggcaagt agagcctgct ccctgccctg caaaggcctg
     1741 aagaaccctg cccaaagggt gagaaataaa accctgtgct ttttgttaaa aaaaaaatct
     1801 gatgaacatt aaccactaaa gtaaaattta gagataaaga tgggcagtgt cgaatgggga
     1861 gcatcacaaa tcaataaaat aattcaagta taatgataga catatttaca tataaacata
     1921 gagaaaagga tatttagcat attacgttgg atataaatat gtgtctagtt gtgtgtatgt
     1981 atatattttc aattgtatag gtaacatatt aactatttgt ggagaaaatt aaaaaaaaaa
     2041 aagcatgaca ctccactctc caggtatgac attgtccaag gcttcatact gaaaactgtg
     2101 acttaattag tgactcaatg ttaatcatgt ggaggtttat agtgagaaga atttgagcag
     2161 aaagttcaag tcagaagatc tttacagttg ataatcttgt caaccccaac tccctgttag
     2221 ggttggcatc atcaggcagt gggacaagct gacgaagact tctttccttc ttccctcaga
     2281 taattgcatt atcatatttc ccttaagatg aacatgtcaa aaggtgtcca accggattac
     2341 aaccctcacc ctttccaggg ggaggtgaag tttgcttgtc tttttcgaca cagcctgtcg
     2401 atctggaagg tagaatttga gattttgaac acagagaact gttctagacc ctggtttagc
     2461 agaaagatca aatcctgggt gaaggttata ggagaagaca gagtgtggga gtagggacta
     2521 aagatggtcc aactgttata ctgagtttac taattttgtc tatcctgata tacttttcaa
     2581 atcttttcta tgactgcatt tggaagagga agagactgag agtagacttg tgaaatttct
     2641 gtatgtcagg acctttaaaa aaaaactctg tataggcagg gcctgggagc actgtgacct
     2701 gactatcaaa atgtctgaat gtctcgacag tttctcagac agaaaggagt ctctttcttg
     2761 accagttttt gtcacagaaa ccagatcatg gctctgagga agtctggttg ccaagacaat
     2821 tatattctat gtttcatcat tattgtgact tgctggtaga caataggggg tgctttcctt
     2881 ccctgtcaac aatagctcag gtgttcttag gttggctcct taaggatatt tgcctgtgat
     2941 ggatgtagaa tagtccctgg agctgtttgt ggccacaccc atgctccctc cccagagaga
     3001 ctttgcaagt ggctttcacc cttgcaatga cctggttatt atttagatct aaatctcttt
     3061 aagcaataaa tatatatgta tccgagtttc tctagcaatg atgatgatgg tgtgaagaag
     3121 cccaaaggca gggtggatat ttgtctgtga attaaaaatg tacctggttg tttctaagga
     3181 gagaaagaaa gggtgtggag ttgggtgggt gaggaggttg ggaggatctg ggaggatcag
     3241 ggggagggga aaccgtgatc agaatttatt atatgaaaaa tttctatttt caaagaaaaa
     3301 aaggggggga accctggact aagaggattt ggagttgatt tcaagggtgt aagtcagaga
     3361 tcacagagcc tgagatgaag aggctgccag gcaactggaa actctagctc aggagaagca
     3421 gggaaacagt tgcttgccct tacctgctca ggtcaagggt atttgatgct cctgtggttt
     3481 gttaaaaaga actctggccc tagtcacaaa cagaatcttt aagtttactc taaggaaaca
     3541 attaccagga aaggcaaaac cacagcggga gagggagagg gaccttccat gcgcacatca
     3601 atgcatatta agaataatgg cagagcttca tttttccaaa gggactaatt tgtccctttg
     3661 tttcaccgaa tgcttgctga gcccccctga gtagttcaga aggtgtatct cagaccacca
     3721 tctaccttac tccattaaaa tggatgtgtc cttcacttca cgcagattct cacctagaga
     3781 cttaagttta caaacaaaac atggattatt gctgtggtga aagaatcctc tgcacaaaga
     3841 tgaacagcag gacacctcta agtaacatat ttccctggtg ggttttacaa tacaattctt
     3901 ggcagggtaa tttgatctgc atacaatttt tcaagacaca cacctgcagg tcacaagtgg
     3961 agtgtctgta tattcatgat ggttactgag atggctaagc atctcagcct agattgtgtt
     4021 ggggtcgatc agtcaccgga gctggttcct gaccactggt gctcctgcag acaactcaca
     4081 ggaagctttg tttttttagc tgctgatctc ctggagggaa cccagcaggg aagaaacagg
     4141 cagatcttgc attagctttc taagaagagg taatgtcctg attagtttct ggactgacta
     4201 agtatagtga tttagagtca ttcactcact gtaatatatg cagatgtttt tgacttaaaa
     4261 agaaagtaat cacgagggct gttattagac actaacagaa caatgtacta gaatgcgctt
     4321 tagtgggaat gccaacacat taactat
//
