LOCUS       NM_001384145            2821 bp    mRNA    linear   ROD 09-SEP-2021
DEFINITION  Mus musculus predicted gene 5784 (Gm5784), transcript variant 1,
            mRNA.
ACCESSION   NM_001384145
VERSION     NM_001384145.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2821)
  AUTHORS   Yang P, Wang Y and Macfarlan TS.
  TITLE     The Role of KRAB-ZFPs in Transposable Element Repression and
            Mammalian Evolution
  JOURNAL   Trends Genet 33 (11), 871-881 (2017)
   PUBMED   28935117
  REMARK    Review article
REFERENCE   2  (bases 1 to 2821)
  AUTHORS   Ecco G, Imbeault M and Trono D.
  TITLE     KRAB zinc finger proteins
  JOURNAL   Development 144 (15), 2719-2729 (2017)
   PUBMED   28765213
  REMARK    Review article
REFERENCE   3  (bases 1 to 2821)
  AUTHORS   Wang J, Wang J and Tian CY.
  TITLE     Evolution of KRAB-containing zinc finger proteins and their roles
            in species evolution
  JOURNAL   Yi Chuan 38 (11), 971-978 (2016)
   PUBMED   27867147
  REMARK    Review article
REFERENCE   4  (bases 1 to 2821)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   5  (bases 1 to 2821)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   6  (bases 1 to 2821)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   7  (bases 1 to 2821)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   8  (bases 1 to 2821)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   9  (bases 1 to 2821)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   10 (bases 1 to 2821)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124739.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.3930423.1,
                                           SRR11927934.542650.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-344               AC124739.2         167059-167402
            345-471             AC124739.2         183504-183630
            472-532             AC124739.2         183833-183893
            533-2821            AC124739.2         185337-187625
FEATURES             Location/Qualifiers
     source          1..2821
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12"
     gene            1..2821
                     /gene="Gm5784"
                     /gene_synonym="EG544848; Gm29737"
                     /note="predicted gene 5784"
                     /db_xref="GeneID:544848"
                     /db_xref="MGI:MGI:3647969"
     exon            1..344
                     /gene="Gm5784"
                     /gene_synonym="EG544848; Gm29737"
                     /inference="alignment:Splign:2.1.0"
     CDS             219..2078
                     /gene="Gm5784"
                     /gene_synonym="EG544848; Gm29737"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="uncharacterized protein LOC544848 isoform 1"
                     /protein_id="NP_001371074.1"
                     /db_xref="GeneID:544848"
                     /db_xref="MGI:MGI:3647969"
                     /translation="MPDQISVSEFVAETLEDYKAPTASSFTTGTAQCRNTAAAIEEDA
                     VTYDDVHVNFTGEEWKLLDPSQKSLYKDVMLETYWNLTVIGYTWETHHIEGHCQSSRR
                     NERYVSNHSGEKLYECNERSKALSCPSHRQCHKRRQIREKIHEHNQCGKAFPTLSNLQ
                     YHKRTHTGEKPYECHQCGKAFRSHSGLQYHKRTHTGEKPYECNQCGKAFAQLSILQRH
                     KRTHTGEKPYECNQCGKAFARHSDLQFHKRTHTGEKPYECNQCGKAFARHGQLQCHKR
                     THTGEKPYECNQCGKAFAQLSILQRHKRTHTGEKPYECDQCGKAFAELSHLQCHKRTH
                     TGEKPYECNQCGKAFSIHSSFQRHKRIHTGEKPYECDQCGKAFAQLSHLQRHKRIHTG
                     EKPYECNQCGKAFAQLSILQRHKRTHTGEKPYECNQCGKAFACHSDLQFHKRTHTGEK
                     PYECNQCGKAFAQHSHLQCHKRTHTGEKPYECDQCGKAFAELSHLQCHKRTHTGEKPY
                     ECNQCGKAFSIHSSFQRHKRIHTGEKPYECDQCGKAFAQFSSLQCHKRTHTGERPYEC
                     NQCVKAFAQLSSLQYHKRTHSGEKPYECNQCGKAFAQHSHLQCHKRTHTGEKP"
     exon            345..471
                     /gene="Gm5784"
                     /gene_synonym="EG544848; Gm29737"
                     /inference="alignment:Splign:2.1.0"
     exon            472..532
                     /gene="Gm5784"
                     /gene_synonym="EG544848; Gm29737"
                     /inference="alignment:Splign:2.1.0"
     exon            533..2821
                     /gene="Gm5784"
                     /gene_synonym="EG544848; Gm29737"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagaggaat cggtagctgc agctcccgga gcacagcgga cagagctgcg ggctgcgtgc
       61 gcccctgctg ccaccgggcc tgccgcggtg gctcccgcgc cccgcggcga cttccgctcc
      121 cgtgcttctc tttgttcaag tccccgagcg gcggccgggt cggagcccgc gccttgggcg
      181 actgaggcgg ccgcagtccg cgccccggcg ccctggcgat gccggaccag atctccgtgt
      241 cggaattcgt ggccgagacc cttgaggact acaaggcacc cactgcctct agcttcacca
      301 ccggcacggc ccagtgccgg aacaccgcgg cggccatcga ggaggatgca gtgacttatg
      361 atgatgtaca tgtgaacttc actggggaag agtggaagtt gctggatcct tcccagaaga
      421 gtctctacaa agatgtgatg ctggagacct actggaacct cactgttata ggctacactt
      481 gggaaaccca tcatattgaa ggacattgtc aaagttcgag aagaaatgaa aggtatgtaa
      541 gtaatcatag tggagagaaa ctctatgaat gtaatgaacg ttctaaagcc ctttcatgtc
      601 ccagtcatcg ccaatgtcat aaaagaagac aaattagaga gaaaatacat gaacataacc
      661 aatgtggtaa agcctttcca acactcagta atcttcaata tcataaaaga acccatactg
      721 gagagaaacc ctatgaatgt catcaatgtg gtaaagcttt tagaagtcac agtggtctcc
      781 aatatcataa aagaacacat actggagaga aaccctatga atgtaatcaa tgtggtaaag
      841 cctttgcaca actcagtatt ctccaacgtc ataaaagaac acatactgga gagaaaccct
      901 atgaatgtaa tcaatgtggt aaagcctttg cacgtcacag tgatctccaa tttcataaaa
      961 gaacacatac tggagagaaa ccctatgaat gtaatcaatg tggtaaagcc tttgcacgtc
     1021 acggtcaact ccaatgtcat aaaagaacac atactggaga gaaaccctat gaatgtaatc
     1081 aatgtggtaa agcctttgca caactcagta ttctccaacg tcataaaaga acacatactg
     1141 gagagaaacc ctatgaatgt gatcaatgtg gtaaagcctt tgcagaactc agtcatctcc
     1201 aatgtcataa aagaacacat actggagaga aaccctatga atgtaatcaa tgtggtaaag
     1261 ccttttctat acacagtagt ttccaacgtc ataaaagaat acatactgga gagaaaccct
     1321 atgaatgtga tcaatgtggt aaagcctttg cacaactcag tcatctccag cgtcataaaa
     1381 gaatacatac tggagagaaa ccctatgaat gtaatcaatg tggtaaagcc tttgcacaac
     1441 tcagtattct ccaacgtcat aaaagaacac atactggaga gaaaccctat gaatgtaatc
     1501 aatgtggtaa agcctttgca tgtcacagtg atctccaatt tcataaaaga acacatactg
     1561 gagagaaacc ctatgaatgt aatcaatgtg gtaaagcctt tgcacaacac agtcatctcc
     1621 aatgtcataa aagaacacat actggagaga aaccctatga atgtgatcaa tgtggtaaag
     1681 cctttgcaga actcagtcat ctccaatgtc ataaaagaac acatactgga gagaaaccct
     1741 atgaatgtaa tcaatgtggt aaagcctttt ctatacacag tagtttccaa cgtcataaaa
     1801 gaatacatac tggagagaaa ccctatgaat gtgatcaatg tggtaaagcc tttgcacaat
     1861 tcagtagtct ccaatgtcat aaaagaacac atactggaga gagaccctat gaatgtaatc
     1921 aatgtgttaa agcctttgca caactcagta gtctccaata tcataaaaga acacattctg
     1981 gagagaaacc ctatgaatgt aatcaatgtg gtaaagcctt tgcacaacac agtcatctcc
     2041 aatgtcataa aagaacacat actggagaga aaccctaaga atgtaatcat tgtgggaaag
     2101 catttgcaca tcacactcat ctccaatatc ataaaagaac acatactgga gagaaaccct
     2161 atgaatgtga tcaatgtggt aaagcctttg caagacccag tcgtctccaa tgtcataaga
     2221 gaacacatac tggagagaga ccctatgaat gtaattggta aagactttgc atgtcacagt
     2281 catctccatc gtcataaaac tgaacatact ggagagaaac ccgatgaatg taatcaatgt
     2341 gggaaagcct ttgcacgtca cagtcatctc cagtgtcata aaagaacaca aactttcctg
     2401 atatagctgt ctcttgtgag gctgttccag tgcctggcaa atacataagt ggatgcccac
     2461 agacatctat tggatagaac acagggccct caatggagga gcctgagaaa gtacccaagg
     2521 agctgaaggg gtctacatcc ctgtaggcag aacaacaata taaactaacc agtaccccca
     2581 gagctcatgt ctctagctgc atatgtagca gaggatggcc tagtctgcca tcattgggaa
     2641 gagaggcccc ttggtcttgc aaactttata agccccagta caggggaacg ccagggccca
     2701 gaagtgggag tgggtgggta ggggagcaat gtggggggag tgtatagggg gactttcagg
     2761 atagcttttt aaatgtaaac gaagaaaata tctaataaaa aattgaaatg taaaaaaaaa
     2821 c
//
