LOCUS       XM_036164617            4358 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus predicted gene, 54248 (Gm54248), transcript
            variant X2, mRNA.
ACCESSION   XM_036164617
VERSION     XM_036164617.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4358
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..4358
                     /gene="Gm54248"
                     /note="predicted gene, 54248; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     long SRA reads, 1 Protein, and 75% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     25 samples with support for all annotated introns"
                     /db_xref="GeneID:118568683"
                     /db_xref="MGI:MGI:6723519"
     CDS             2433..4358
                     /gene="Gm54248"
                     /codon_start=1
                     /product="MLV-related proviral Env polyprotein-like"
                     /protein_id="XP_036020510.1"
                     /db_xref="GeneID:118568683"
                     /db_xref="MGI:MGI:6723519"
                     /translation="MEGPAFSKPLKDKINPWGPLIILGILIRAGVSVQHDSPHQVFNV
                     TWRVTNLMTGQTANATSLLGTMTDAFPKLYFDLCDLIGDDWDETGLGCRTPGGRKRAR
                     TFDFYVCPGHTVPTGCGGPREGYCGKWGCETTGQAYWKPSSSWDLISLKRGNTPRNQG
                     PCYDSSAVSSDIKGATPGGRCNPLVLEFTDAGKKASWDGPKVWGLRLYRSTGTDPVTR
                     FSLTRQVLNIGPRVPIGPNPVITDQLPPSRPVQIMLPRPPQPPPPGAASIVPETAPPS
                     QQPGTGDRLLNLVDGAYQALNLTSPDKTQECWLCLVAGPPYYEGVAVLGTYSNHTSAP
                     ANCSVASQHKLTLSEVTGQGLCVGAVPKTHQALCNTTQKTSDGSYYLAAPAGTIWACN
                     TGLTPCLSTTVLDLTTDYCVLVELWPKVTYHSPGYVYGQFERKTKYKREPVSLTLALL
                     LGGLTMGGIAAGVGTGTTALVATKQFEQLQAAIHTDLGALEKSVSALEKSLTSLSEVV
                     LQNRRGLDLLFLKEGGLCAALKEECCFYADHTGVVRDSMAKLRERLNQRQKLFESGQG
                     WFEGLFNRSPWFTTLISTIMGPLIILLLILLFGPCILNRLVQFVKDRISVVQALVLTQ
                     QYHQLKSIDPEEVESRE"
ORIGIN      
        1 gactgtcagc agttgttggg gaccctgctg accggagaag aaaagcagcg ggtgctccta
       61 gaggctagaa aggcagtccg gggcaatgat ggacgcccca ctcagttgcc taatgaagtc
      121 aatgctgctt ttccccttga acgccccggt tgggattaca ccactacaga aggtaggaac
      181 cacctagtcc tctatcgcca gttgctctta gcgggtctcc agaacgcggg cagaagtccc
      241 accaatttgg ccaaggtaaa agggataacc cagggaccta atgagtctcc ctcagccttt
      301 ttagagagac tcaaagaggc ctatcgcagg tacactcctt atgaccctga ggacccaggg
      361 caagaaacca atgtgtctat gtcattcatc tggcagtctg ccccggatat cgggcgaaag
      421 ttagagcggt tagaagattt aaagagcaag accttaggag acttagtgag ggaagctgaa
      481 aagatcttta ataagcgaga aaccccggaa gaaagagagg aacgtatcaa gagagaaaca
      541 gaggaaaaag aagaacgccg tagggcagag gatgagcaga gagagaaaga aagggaccgc
      601 agaagacata gagagatgag caagctcttg gccactgtag ttattggtca gagacaggat
      661 agacaggggg gagagcggag gaggccccaa cttgataagg accaatgcgc ctactgcaaa
      721 gaaaagggac actgggctaa ggactgccca aagaagccac gagggccccg aggactgagg
      781 ccccagacct ccctcctaac cttaggtgac tagggaggtc agggtcagga gcccccccct
      841 gaacccagga taaccctcaa agtcgggggg caacccgtca ccttcctggt agatactggg
      901 gcccaacact ccgtgctgac ccaaaatcct ggacccctaa gtgacaaggc tgcctgggtc
      961 caaggggcta ctggaggaaa gcggtatcgc tggaccacgg atcgcaaagt acatctagct
     1021 accggtaagg tcacccactc tttcctccat gtaccagact gcccctatcc tctgctagga
     1081 agagacttgc tgactaaact aaaagcccaa atccacttcg agggatcagg agctcaggtt
     1141 atgggaccaa tgggactgcc cctgcaagtg ctgaccctaa acatagaaga tgagtatcgg
     1201 ctacatgaga cctcaaaaga gccggatgtt tctctagggt ccacctggct ttctgatttt
     1261 ccccaggtct gggcggaaac cgggggcatg ggactggcag ttcgccaagc tcctctgatc
     1321 atacctctga aggcaacctc tacccccgtg tccataaaac aataccccat gtcacaagaa
     1381 gccagactgg ggatcaagcc ccacatacag agactgttgg accagggaat actggtaccc
     1441 tgccagtccc cctggaacac gcccctgcta cccgttaaga aaccagggac taatgattat
     1501 aggcctgtcc aggatctgag agaagtcaac aagcgggtgg aagacatcca ccccaccgtg
     1561 cccaaccctt acaacctctt gagcgggctc ccaccgtccc accagtggta cactgtgctt
     1621 gatttaaagg atgccttttt ctgcctgaga ctccacccca ccagtcagcc tctcttcgcc
     1681 tttgagtgga gagatccaga gatgggaatc tcaggacaat tgacctggac cagactccca
     1741 cagggtttca aaaacagtcc caccctgttt gatgaggcac tgcacagaga cctagcagac
     1801 ttccggatcc agcacccaga cttgatcctg ctacagtacg tggatgactt actgctggcc
     1861 gccacttctg agctcgactg ccaacaagag cctcaccatg actgcctcga gatcttggcc
     1921 gagacacacg gaaccagacc agacctcacg gaccagcccc tcccagacgc cgaccacacc
     1981 tggtatacag atggaagcag cttcctgcaa gagggacaac gtagggctgg agcagcggtg
     2041 accaccgaga ccgaggtaat ctgggccaag gcgttgccag ccgggacatc cgcccagcga
     2101 gctgaactaa tagcactcac ccaggcccta aagatggcag aagctcactt acaggccctc
     2161 caagcagtac aacgagaggt ctggaagcca ctggccgctg cctatcagga ccagctggac
     2221 cagccagtga taccacaccc cttccgtgtc ggcgacaccg tgtgggtacg ccggcaccag
     2281 actaagaact tggaacctcg ctggaaagga ccctacaccg tcctgctgac cacccccacc
     2341 gctctcaaag tagacggcat cgctgcgtgg atccacgccg ctcacgtaaa agcggcgaca
     2401 acccctccgg ccggaacagc atcaggaccg acatggaagg tccagcgttc tcaaaacccc
     2461 ttaaagataa gattaacccg tggggccccc taataatcct ggggatctta ataagggcag
     2521 gagtatcagt acaacatgac agccctcatc aggtcttcaa tgttacttgg agagttacca
     2581 acttaatgac aggacaaaca gctaatgcta cctccctcct ggggacaatg accgatgcct
     2641 ttcctaaact gtactttgac ttgtgcgatt taatagggga cgactgggat gagactggac
     2701 tcgggtgtcg cactcccggg ggaagaaaaa gggcaagaac atttgacttc tatgtttgcc
     2761 ccgggcatac tgtaccaaca gggtgtggag ggccgagaga gggctactgt ggcaaatggg
     2821 gctgtgagac cactggacag gcatactgga agccatcatc atcatgggac ctaatttccc
     2881 ttaagcgagg aaacacccct cggaatcagg gcccctgtta tgattcctca gcggtctcca
     2941 gtgacatcaa gggcgccaca ccggggggtc gatgcaatcc cctagtcctg gaattcactg
     3001 acgcgggcaa aaaggccagc tgggatggcc ccaaagtatg gggactaaga ctgtaccgat
     3061 ccacagggac cgacccggtg acccggttct ctttgacccg ccaggtcctc aatatagggc
     3121 cccgcgtccc cattgggcct aatcccgtga tcactgacca gttacccccc tcccgacccg
     3181 tgcagatcat gctccccagg cctcctcagc ctcctcctcc aggcgcagcc tctatagtcc
     3241 ctgagactgc cccaccttct caacaacctg ggacgggaga caggctgcta aacctggtag
     3301 atggagccta ccaagctctc aacctcacca gtcctgacaa aacccaagag tgctggttgt
     3361 gtctggtagc gggacccccc tactacgaag gggttgccgt cctaggtact tattccaacc
     3421 atacctctgc cccagctaac tgctccgtgg cctcccaaca caagctgacc ctgtccgaag
     3481 tgaccggaca gggactctgc gtaggagcag ttcccaaaac ccatcaggcc ctgtgtaata
     3541 ccacccagaa gacgagcgac gggtcctact atctggctgc tcccgccggg accatttggg
     3601 cttgcaacac cgggctcact ccctgcctat ctaccactgt actcgacctc accaccgatt
     3661 actgtgtcct ggttgagctc tggccaaagg tgacctacca ctcccctggt tatgtttatg
     3721 gccagtttga gagaaaaacc aaatataaaa gagagccggt gtcattaact ctggccctgc
     3781 tgttgggagg acttactatg ggcggcatag ctgcaggagt aggaaccggg actacagccc
     3841 tagtggccac caaacaattc gagcagctcc aggcagccat acatacagac cttggggctt
     3901 tagaaaagtc agtcagtgcc ctagaaaagt ctctgacctc gttgtctgag gtggtcctac
     3961 agaaccggag gggattagat ctactgttcc taaaagaagg aggattatgt gctgccctaa
     4021 aagaagaatg ctgtttctac gcggaccaca ctggcgtagt aagagatagc atggcaaagc
     4081 taagagaaag gttgaaccag agacaaaaat tgttcgaatc aggacaaggg tggtttgagg
     4141 gactgtttaa caggtcccca tggttcacga ccttaatatc caccattatg ggccccttga
     4201 taatactttt attaatccta ctcttcggac cctgtattct caaccgcttg gtccagtttg
     4261 taaaagacag aatttcggta gtgcaggccc tggttttgac ccaacagtat caccaactca
     4321 aatcaataga tccagaagaa gtggaatcac gtgaataa
//
