LOCUS       XM_036162139             567 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus predicted pseudogene 5396 (Gm5396), mRNA.
ACCESSION   XM_036162139
VERSION     XM_036162139.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000086.8) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="X"
     gene            1..567
                     /gene="Gm5396"
                     /note="predicted pseudogene 5396; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 11
                     Proteins, and 38% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:385454"
                     /db_xref="MGI:MGI:3646589"
     CDS             1..567
                     /gene="Gm5396"
                     /codon_start=1
                     /product="high mobility group protein B1-like"
                     /protein_id="XP_036018032.1"
                     /db_xref="GeneID:385454"
                     /db_xref="MGI:MGI:3646589"
                     /translation="MSKGEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGNFEDMA
                     KADKARYEREMKTYIPHKGETKKKFKDPNAPKRPPLAFLFCSEYCPKITGKHPGLSIG
                     DLAKKLGKMWHNTAADDKQPYEKKAAKLKEKYEKGIAAHGAKGEPDAAKKGVVKAEKS
                     KKKKEEEDGEEDEEDEEEEEEDIGDDDG"
ORIGIN      
        1 atgagcaaag gagaggagca caagaagaag cacccggatg cttctgtcaa cttctcagag
       61 ttctccaaaa agtgctcaga gaggtggaag accatgtctg ctaaagaaaa ggggaatttt
      121 gaagatatgg caaaggctga caaggctcgt tatgaaagag aaatgaaaac ctacatccct
      181 cacaaagggg agaccaaaaa gaagttcaag gaccctaatg cacccaagag gcctcctttg
      241 gccttcttgt tctgttctga gtactgcccc aaaatcacag gcaagcatcc tggcttatcc
      301 attggtgatc ttgcaaagaa actaggaaag atgtggcaca acactgcagc ggatgacaag
      361 cagccctatg agaagaaggc tgctaagctg aaggagaagt acgagaaggg tattgctgcc
      421 cacggagcta aaggagaacc tgatgcagcg aaaaaggggg tggtcaaggc tgaaaagagc
      481 aagaaaaaga aggaagagga agatggtgag gaggatgaag aggatgagga agaggaggaa
      541 gaagatatag gtgatgatga tggataa
//
