LOCUS       XM_030248219             879 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus predicted gene 4606 (Gm4606), mRNA.
ACCESSION   XM_030248219
VERSION     XM_030248219.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq; corrected model.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 5 indels
            internal stop codons :: corrected 4 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-208               AC158981.2         10236-10443
            209-441             AC158981.2         32335-32567
            442-558             AC158981.2         32570-32686
            559-693             AC158981.2         32689-32823
            694-694             "N"                1-1
            695-762             AC158981.2         32824-32891
            763-834             AC158981.2         32893-32964
            835-879             AC158981.2         32966-33010
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..879
                     /gene="Gm4606"
                     /note="predicted gene 4606; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 1
                     base in 1 codon; deleted 6 bases in 4 codons; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 56% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:100043721"
                     /db_xref="MGI:MGI:3782789"
     CDS             358..879
                     /gene="Gm4606"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 6 bases in 4 codons; substituted 4 bases at 4
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:415..417,aa:OTHER)
                     /transl_except=(pos:613..615,aa:OTHER)
                     /transl_except=(pos:646..648,aa:OTHER)
                     /transl_except=(pos:868..870,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: NADH dehydrogenase
                     [ubiquinone] 1 alpha subcomplex assembly factor 4"
                     /protein_id="XP_030104079.1"
                     /db_xref="GeneID:100043721"
                     /db_xref="MGI:MGI:3782789"
                     /translation="MGTPVTHTIRNFYLENRGEXEISKMKPSTVLKHSYPCSLLSKQL
                     RHHPEIKEVARKGKKLLSLLNNVYVDPKVLASSLQVKDIEPXQEPKEFRLEIXHHFDM
                     NIMGVSKGKLXIIEVLTLLNNHTFSQERQTAGKTTKEFYLELKYVNSLLNYLVTFNVK
                     IFPFEEKKVIXSK"
ORIGIN      
        1 gtgttctgac attgtgactt atgataaggc tacatactcc gtcttcgctc tgtttcttgg
       61 ccacagctcc tgtaaccttg gaatctccag agtggtcagt attgtttcct gtgtgagtga
      121 gatgagtgaa gaaagggtgc tggatcactt caggatggag ttgtgggttg ctaaggaaag
      181 caaccacagt aacacatccc cacttccggt tctctgaaac tggcaggcct gaagatcaaa
      241 atctacttaa catccaaagc cactagactc aaaatgcagt ccattaaaat gtcccgagtc
      301 caatagccct tcatgataaa agtcctgaag aggcactgaa ggcatcatgt tgtagggatg
      361 gggactccag tgacccacac catcaggaac ttctacctgg agaacagagg agagtaggaa
      421 atcagcaaga tgaagccatc tacagttctc aagcactctt atccctgcag cctcctaagc
      481 aagcagctga gacaccatcc agaaatcaaa gaagttgcta gaaaaggtaa aaagttgttg
      541 tcattactaa acaatgtata tgtcgatcct aaagttctgg catcttcctt gcaagtaaaa
      601 gatattgaac cataacaaga accaaaagaa ttcagattgg agatatgaca tcactttgat
      661 atgaatatta tgggtgtttc caaaggcaaa ttanctatta tagaagtatt gacccttctc
      721 aataaccata cattttctca agaaagacag acagctggga aaactacaaa agaattctat
      781 ttagaactaa aatatgtaaa ttcccttctc aactatttag ttacttttaa tgtcaaaatc
      841 tttccttttg aagaaaagaa agtaatatga tcaaaatga
//
