LOCUS       NM_001320725            3895 bp    mRNA    linear   ROD 22-APR-2022
DEFINITION  Mus musculus predicted gene, 45935 (Gm45935), mRNA.
ACCESSION   NM_001320725
VERSION     NM_001320725.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3895)
  AUTHORS   Zhang Y, Leaves NI, Anderson GG, Ponting CP, Broxholme J, Holt R,
            Edser P, Bhattacharyya S, Dunham A, Adcock IM, Pulleyn L, Barnes
            PJ, Harper JI, Abecasis G, Cardon L, White M, Burton J, Matthews L,
            Mott R, Ross M, Cox R, Moffatt MF and Cookson WO.
  TITLE     Positional cloning of a quantitative trait locus on chromosome
            13q14 that influences immunoglobulin E levels and asthma
  JOURNAL   Nat Genet 34 (2), 181-186 (2003)
   PUBMED   12754510
  REMARK    GeneRIF: PCR detection of readthrough transcription at human
            ortholog
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114007.6.
            
            Summary: This gene represents naturally-occurring readthrough
            transcription between the upstream Setdb2 (SET domain, bifurcated
            2) gene to the downstream Phf11c (PHD finger protein 11C) gene.
            Some transcripts may also extend to the Phf11d (PHD finger protein
            11D) gene. Readthrough transcripts may encode fusion proteins with
            similarity to proteins encoded by each of the individual genes.
            [provided by RefSeq, Mar 2016].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422592.64098.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            readthrough transcript :: includes exons from GeneID 219132,
                                      239122, 628705
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-294               AC114007.6         45296-45589
            295-623             AC114007.6         48411-48739
            624-749             AC114007.6         54908-55033
            750-815             AC114007.6         59622-59687
            816-912             AC114007.6         62692-62788
            913-1473            AC114007.6         66615-67175
            1474-1590           AC114007.6         68651-68767
            1591-1760           AC114007.6         70308-70477
            1761-1959           AC114007.6         72497-72695
            1960-2059           AC114007.6         73365-73464
            2060-2153           AC114007.6         73992-74085
            2154-2494           AC114007.6         76658-76998
            2495-2583           AC114007.6         79442-79530
            2584-2666           AC114007.6         83760-83842
            2667-2788           AC114007.6         93025-93146
            2789-2896           AC114007.6         95203-95310
            2897-3027           AC114007.6         96777-96907
            3028-3077           AC114007.6         98780-98829
            3078-3145           AC114007.6         99828-99895
            3146-3209           AC114007.6         100646-100709
            3210-3341           AC114007.6         101261-101392
            3342-3413           AC114007.6         102794-102865
            3414-3580           AC114007.6         104692-104858
            3581-3895           AC114007.6         105029-105343
FEATURES             Location/Qualifiers
     source          1..3895
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14"
     gene            1..3895
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /note="predicted gene, 45935"
                     /db_xref="GeneID:107303348"
                     /db_xref="MGI:MGI:5825572"
     exon            1..294
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            295..623
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     CDS             608..3583
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /note="Setdb2-Phf11c readthrough; Setdb2-Phf11-1-Phf11-2
                     fusion"
                     /codon_start=1
                     /product="Setdb2-Phf11c protein"
                     /protein_id="NP_001307654.1"
                     /db_xref="GeneID:107303348"
                     /db_xref="MGI:MGI:5825572"
                     /translation="MEEKNGDAKTFWMELQDDGKVDLMFEKTQNVLHSLKQKIKDGSA
                     TNGDYVQAMNLVNEATLSNTQTLEKDHTPVTQSEQENKSSAVPSASCDNSCPKGCTIP
                     SPGKKVFLPVKNKADNLVKKEAPLHISFHRHICSRTCLMETPLSLKGENPLQLPIRCH
                     FQRRHAKTNSHSSALHVNYKTPCGRNLRNMEEVFHYLLETECNFLFTDNFSFNTYVQL
                     TRNHPKQNEVVSDVDISNGVESVSIPFCNEIDNSKLPRFKYRNTVWPRIYHLNFSNMF
                     SDSCDCSEGCIDIKKCACLQLTAKNAKACPLSSDGECAGYKYKRLQRLIPTGIYECNL
                     LCKCNKQMCQNRVIQHGVRVRLQVFKSEKKGWGVRCLDDIDKGTFVCIYSGRLLRRAT
                     PEKTNIGENGREQQHIVKNSFSKKRKLEVVCSDCDAHCDSPKAEDCPPKLSGDLKEPA
                     VEMNHRNISRTQHHSVIRRTKSKTTVFHYSEKNMGFVCSDSAAPEDKNGFKPAQEHVN
                     SEARRAHEDLSSNPAGDSEDTQLTESDVIDITASREDSAPAYRCKHATIVDRKDTKQV
                     LEVPGKKSQEEEPAASQSQQALCDEELPSERTKIPSASLMQLSKESLFLLDASKEGNV
                     GRFLNHSCCPNLWVQNVFVETHDRNFPLVAFFTNRYVKARTELTWDYGYEAGATPAKE
                     ILCQCFCQLTEKMEKRTCALCPEGHDWSVIYFVPSANIAAHENCLLYSSGLVECEAHN
                     PCKIARNVDVKSVLERIWRGSTMICSFCNNEGAIVRCGETSCAKNYHLFCAKEDYAVL
                     QGGVTRTYKLFCPEHPPQQEEATESADGPSMKRKRGRKKRLSSGPPAQPKVVKFMRSK
                     RHVTGEPLGHRDAAVKAPFLKKCKKAGLLNVLLEYILEKMNSIYGRLLDETASESDYE
                     GIETLLFGCGLFKDTLRKFQEVIKSKACEWEERQRLMKQQLEALADLQQSLCSFQENG
                     DLDCSSSTSGSLLPPEDHQ"
     exon            624..749
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            750..815
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            816..912
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            913..1473
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            1474..1590
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            1591..1760
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            1761..1959
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            1960..2059
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            2060..2153
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            2154..2494
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            2495..2583
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            2584..2666
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            2667..2788
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            2789..2896
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            2897..3027
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            3028..3077
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            3078..3145
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            3146..3209
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            3210..3341
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            3342..3413
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            3414..3580
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
     exon            3581..3895
                     /gene="Gm45935"
                     /gene_synonym="Setdb2-phf11c"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgcggggc cgcggaaact gtgtggagct cccttggggc tgatgtctcc cccgctgagg
       61 tgaagccgcc tcgggactgc agactctggt gcggacagtg caaggcgcgc ggggtgccag
      121 gccgcctcaa cccgctgtct cagtagcggg ggtggccggg gctctcagtc gcgtttcccc
      181 caccgtcttg cggcgctcac tttcgtggct ggtgatttct gagtaatttg gctatcatgg
      241 gctgtagaca gcggagcaca gacaagatct tcaggacact ggtccattcc acagagtgtt
      301 tcatgcattt gtggaccaaa acatgggatg aactttaatt ttaaaaagac attgtcagta
      361 gtcctgatcc ggctttcaac ctggccttga agaagatgct gtgcctgttt ttcttggact
      421 agtagtcatt ctgaaagtct attcaagcac agtttctatt tgcaaattca aatactaaag
      481 actattagga agtggcctaa cgagatactc tctttgggga ctacagattt catagagact
      541 gcagttggag cccatttagt tttgattaac ttcattttga agaattttat ataagcaaca
      601 ccaaaagatg gaagaaaaaa atggtgatgc aaagactttc tggatggagc tacaagatga
      661 tggtaaagtt gacttaatgt ttgagaaaac acaaaatgtc ctacattcac tgaaacagaa
      721 gataaaggat gggtctgcca caaatggaga ctatgtccaa gcaatgaatc tagtaaatga
      781 agccactctg agtaacacgc aaacactgga aaaggatcat acacctgtga ctcagagtga
      841 acaggaaaac aaatcaagtg cggttccctc tgcatcatgt gacaactcct gtcctaaggg
      901 ctgtactatc ccatctccag gaaaaaaagt attcctccct gtgaagaata aagctgacaa
      961 tttagtgaaa aaggaagccc cactgcatat atctttccat cgccatatct gctccaggac
     1021 ttgtctaatg gaaaccccac tgtccttgaa gggagaaaac cccctgcagc taccaatcag
     1081 atgtcacttc caaagacgac atgcaaagac aaactctcat tcttctgccc tccatgtgaa
     1141 ttataaaacg ccctgtggac ggaatctacg aaacatggag gaagttttcc attacctgct
     1201 tgaaacagag tgtaactttt tattcacaga caacttctct ttcaatactt atgtccagtt
     1261 gactcggaat cacccaaagc aaaatgaagt tgtttctgac gtggatatta gtaatggagt
     1321 ggaatcagtg tcgattcctt tctgtaatga aattgacaac agtaaacttc cacggtttaa
     1381 gtatagaaat acagtatggc cccgaatata tcatctgaac ttttccaaca tgttttctga
     1441 ttcatgtgac tgttctgagg gctgcataga cataaaaaaa tgtgcatgtc ttcagttgac
     1501 agcaaagaat gccaaggcat gtcccttgtc atcggatgga gaatgtgctg gatataaata
     1561 caaaagactg cagaggctca tacctactgg catttatgaa tgcaacctgc tctgcaagtg
     1621 taacaaacag atgtgtcaaa accgagttat ccagcatggt gtccgggtga ggctacaggt
     1681 gttcaaaagt gagaagaagg gctggggagt acgctgcctg gatgacattg acaaagggac
     1741 atttgtgtgc atttattcag gaaggttact gcgcagagcc actcctgaga aaactaatat
     1801 aggtgaaaat ggaagagagc aacagcacat tgtgaaaaat tcattttcca aaaagaggaa
     1861 actagaagtt gtgtgttcag attgtgacgc acactgtgac agtcctaagg ctgaggactg
     1921 ccctcccaag cttagtggtg atctcaaaga gcccgctgtg gaaatgaacc atagaaatat
     1981 ttcaagaact cagcatcatt cagtcattag aagaactaaa tccaagacaa ctgtttttca
     2041 ttacagtgag aaaaacatgg gatttgtttg ctcagattct gccgccccag aagataagaa
     2101 tggatttaaa ccagctcaag aacacgtgaa ctctgaagct aggagagctc acgaggactt
     2161 aagttcaaac ccagctggag attctgaaga cacacagctg actgaatcag acgtgataga
     2221 tataactgca agtagagaag actctgcccc agcatacagg tgtaagcacg caaccatagt
     2281 ggatcgtaag gacactaaac aggtgcttga agtcccagga aagaagtccc aagaggaaga
     2341 gcctgcagcc tctcaaagcc agcaggcctt gtgtgatgag gagctgccaa gtgagaggac
     2401 aaagattcca tctgcttccc tgatgcagct cagtaaggag agtctgtttc tattggatgc
     2461 ttcaaaagaa ggaaatgtgg gccgtttcct caatcatagt tgctgtccaa atctctgggt
     2521 gcagaatgtt tttgtagaaa cacatgacag gaatttccca ttggtggcct tcttcaccaa
     2581 caggtatgtg aaagcaagga cagaactaac gtgggattat ggttatgaag ctggggccac
     2641 gcctgcaaag gaaatcctct gccaatgttt ctgtcagctt acagaaaaga tggaaaaaag
     2701 aacatgtgcc ctctgccctg aaggccatga ttggagcgtg atatactttg taccatcagc
     2761 taatatagct gctcatgaaa actgtttgct gtattcatca ggattggtgg aatgtgaggc
     2821 ccataatcca tgtaaaatag ctagaaatgt tgatgtgaaa tcagtactgg aaaggatctg
     2881 gagaggaagc acaatgatat gctcgttttg taataatgaa ggagccatcg taaggtgtgg
     2941 tgaaacatct tgtgccaaga attaccactt attctgtgcc aaggaggact acgcagttct
     3001 acaaggtgga gttacaagaa cttacaaatt attttgccca gaacatcctc cacaacaaga
     3061 agaggccact gaaagtgctg atggcccaag catgaagagg aagagaggaa gaaagaaacg
     3121 cctctcatca ggccctcctg cacagccaaa agtggtgaaa ttcatgagat ccaaaagaca
     3181 tgtgacagga gagcctctcg gccacagaga tgcagctgtc aaagctcctt ttcttaagaa
     3241 atgcaagaaa gcaggacttc ttaatgtttt acttgaatac atactagaaa aaatgaattc
     3301 aatttatgga agactcctgg atgagactgc ctcagagtca gactatgaag ggatcgagac
     3361 cttactgttt ggctgtggat tatttaaaga cacactaaga aaattccaag aagtaatcaa
     3421 gagtaaagct tgtgaatggg aagaaaggca aaggctgatg aagcagcagc ttgaggcact
     3481 tgcagactta caacaaagct tgtgctcatt tcaagaaaat ggggacctgg actgctcaag
     3541 ttctacatca ggatccttgc tacctcctga ggaccaccag taaaagctgt tcctcaggaa
     3601 aactggatgg ggcctccatg ttctccaagg atcgaggaag tcttcctgcc taccctgccc
     3661 accccagtca agggcagcaa caccagagct ttgctcagcc ttaaatggaa tcttagagct
     3721 ttctcttgct tctgctgctc ctaaaaatgg tctcatcatg gtctcctctc agtattaata
     3781 actccatcag catagagcag actcaaccct atgcattgct ccctgttacc ctgggtttct
     3841 gctcactacc acattgacaa tatttagcac acttaataaa tgcttgtcaa aacca
//
