LOCUS       XM_011244246            2379 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus predicted gene, 40447 (Gm40447), mRNA.
ACCESSION   XM_011244246
VERSION     XM_011244246.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..2379
                     /gene="Gm40447"
                     /note="predicted gene, 40447; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 93%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:105244925"
                     /db_xref="MGI:MGI:5623332"
     CDS             1..1401
                     /gene="Gm40447"
                     /codon_start=1
                     /product="collagen alpha-1(II) chain-like"
                     /protein_id="XP_011242548.1"
                     /db_xref="GeneID:105244925"
                     /db_xref="MGI:MGI:5623332"
                     /translation="MAFTGTGAARRPGLLNCAPTRTFELSHRITSSKSFGGWKLLGKQ
                     GRGKQLSEIRRVHKGKCYTGLLHLHLRQRLLWPAALDAIHGPPPTLGIFSDLKRETVR
                     RTRCYRQTLKAIVQTTKTASDQNGIIIPAVPAPPLRPPRLRAAAPASSLPTQGSRVLS
                     TVCAPAAGSPVPGASLPPPVVLQSLRRGFSVLTPGSKSFPPRRDARNANNQPSAPAWT
                     GIGGQWGVPGPSWVHPRAGPGGDTKKPGTPTPIAGARRDPQGAPPAAKFTAPRAPRCP
                     LPGEVSHGPAGSRASRDSRGPPGLPAGLWGLRRARARLFPALPLSQGALGRGAPRGCA
                     HRCLPGREARAGVRPDLLRAPLASLPRWRPSIALPLALPCGRRLAAQPSALRSGLEAT
                     DHAPRPPGPPSPALAAARSSALGAEPPPCGHRNFPSALQTLAGGGSEELTPNAGSRAS
                     ASVPTRSWRQRGGRLS"
ORIGIN      
        1 atggcgttta ctggaacggg agctgcgagg aggccaggtc tgcttaactg tgcccccacc
       61 cgaacattcg agctcagcca cagaattacc tccagcaaga gctttggggg atggaaactt
      121 ttagggaagc aggggagggg aaaacaactt tcggaaataa ggcgcgtcca caaaggcaag
      181 tgttacactg gacttctcca cctccatctc aggcagcggc tcctgtggcc agcagccctg
      241 gatgcaatcc acgggccccc tcccacactg ggcatctttt cagacctcaa gagagagacc
      301 gtaaggagga ccaggtgcta ccgtcagacc ctaaaggcaa ttgtacagac aacaaagacc
      361 gcaagcgatc aaaatggaat tataatcccc gcggtcccag cgccccctct ccgcccgccg
      421 agactcaggg ccgccgcgcc cgcctcttct cttccaacgc aagggtcccg cgtcctgtcc
      481 acagtgtgcg ccccggctgc aggttctccg gtccccgggg ctagcctccc gccgcccgtg
      541 gttttgcaat ctctgcgccg cggcttcagt gttctaacac ccggttcgaa atctttcccg
      601 cccaggcgtg acgcgaggaa tgcaaacaat cagccgagcg cgcccgcctg gaccgggata
      661 gggggacagt ggggagtccc ggggccgagc tgggtgcacc cgcgggccgg gcccggaggt
      721 gacacaaaga agcccgggac accaacgcca atcgctggcg ctcgccgcga tccccagggt
      781 gccccgcccg ccgctaagtt tacagcgccc cgcgcgcccc gctgtcccct cccgggtgaa
      841 gtttcccacg gcccagctgg gagccgggca tccagagact cccgtgggcc ccccgggctc
      901 cccgctgggc tctggggact ccgcagggct cgtgcccgcc tcttccccgc cctcccgctc
      961 tcgcagggcg ctttagggcg cggagccccc cgcggctgcg ctcaccgttg tctgcccggc
     1021 cgggaggcga gggccggagt tcgacccgac ctactccgcg cccccctcgc ctcgctgcct
     1081 cgatggcgcc cctcgatcgc tctcccgctc gctcttccgt gcggccgaag gcttgcggcg
     1141 cagccgagcg cgctccgctc tggactggag gctacagacc acgccccgcg ccctcccggc
     1201 ccgcccagtc ccgcgctcgc cgccgcccgg agcagcgcac tgggggcgga gccgcctccc
     1261 tgcggccacc gcaactttcc ctccgcctta cagacccttg caggtggcgg gagtgaggaa
     1321 ctaactccga acgcaggttc acgagcctcc gcctccgtgc ctacccgcag ctggagacaa
     1381 aggggaggcc gactctccta gaacactttt caggcgggtt tcacttcttc acggtgggtg
     1441 gatgcctaga tctacaaatc agcgagccga ccgcgatccg gtccttgaac ccaggtggag
     1501 ccttagagaa acatggactt ttcatcggct tcttaagagt gtcaggaagc ccagacctcg
     1561 acctcaccta cggagtcttg catgtggcag agagacacca actacttaag aatgttgccc
     1621 atcacgtctc tgacttttgg ctaagatcaa gtataaaatt ctgccttcga ggaaataata
     1681 agcttcaagg agagcaactg gatttacctg tttctcaagg aagacgggct catcattatc
     1741 actctgtgac ttggaactca cagagcttct gttatcagct ccatcacatc gatgactagt
     1801 gaaacagaca gttactgcca acctcccatg aaccgaggca tcagaagtgg gaggacagga
     1861 gagaagaaag gaagagagga ggaggtcttc tttttgtcca ttctttgcca ttcaagggct
     1921 cagcaaggag acagctgtgc acaaccgagg ccagtgtcag cttagaactt ggccatgacc
     1981 tgatcttggc tttcaaaatt acagaactgt gggagttaca agagtctcag tgtccctgcc
     2041 tgtcctcaaa ctcactgcaa tctgtcacca tgcatggctc agtggggtca cttacaaaac
     2101 agctggtgac taagaggttg acagtgacgc ctcccttgag attatgtcct ctctgccagg
     2161 aaggaagaaa tcccttatca gaggccactg caaatccatg ctgggaagcc aacagaattt
     2221 ctacaataac tcttatcatc tgcgccaccc ccatccctcc ccatagtgcc cagtgacttc
     2281 tgtacacgtc accatttcct ggctcgaatc cctttgtctt atcatttctt cactatttcg
     2341 agtttctcta aaagatacag ctgctttctg tcctggtca
//
