LOCUS       NM_001370852            1578 bp    mRNA    linear   ROD 16-FEB-2025
DEFINITION  Mus musculus predicted gene, 38999 (Gm38999), mRNA.
ACCESSION   NM_001370852 XM_011250936
VERSION     NM_001370852.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Zoch,A., Konieczny,G., Auchynnikava,T., Stallmeyer,B., Rotte,N.,
            Heep,M., Berrens,R.V., Schito,M., Kabayama,Y., Schopp,T.,
            Kliesch,S., Houston,B., Nagirnaja,L., O'Bryan,M.K., Aston,K.I.,
            Conrad,D.F., Rappsilber,J., Allshire,R.C., Cook,A.G., Tuttelmann,F.
            and O'Carroll,D.
  TITLE     C19ORF84 connects piRNA and DNA methylation machineries to defend
            the mammalian germ line
  JOURNAL   Mol Cell 84 (6), 1021-1035 (2024)
   PUBMED   38359823
  REMARK    GeneRIF: C19ORF84 connects piRNA and DNA methylation machineries to
            defend the mammalian germ line.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC149091.3.
            
            On Jun 6, 2019 this sequence version replaced XM_011250936.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849383,
                              SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                AC149091.3         227495-227545
            52-1578             AC149091.3         228135-229661
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7"
     gene            1..1578
                     /gene="Gm38999"
                     /gene_synonym="C7H19orf84; Gm52993"
                     /note="predicted gene, 38999"
                     /db_xref="GeneID:105242927"
                     /db_xref="MGI:MGI:5621884"
     exon            1..51
                     /gene="Gm38999"
                     /gene_synonym="C7H19orf84; Gm52993"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..574
                     /gene="Gm38999"
                     /gene_synonym="C7H19orf84; Gm52993"
                     /note="uncharacterized protein C19orf84 homolog"
                     /codon_start=1
                     /product="piRNA-mediated silencing protein C19orf84
                     homolog"
                     /protein_id="NP_001357781.1"
                     /db_xref="CCDS:CCDS90216.1"
                     /db_xref="GeneID:105242927"
                     /db_xref="MGI:MGI:5621884"
                     /translation="MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPT
                     HLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRP
                     PRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPST
                     PPVTPPSQDGQKEAGGLSEDWEADY"
     exon            52..1578
                     /gene="Gm38999"
                     /gene_synonym="C7H19orf84; Gm52993"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1553..1558
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gm38999"
                     /gene_synonym="C7H19orf84; Gm52993"
                     /note="hexamer: AATAAA"
     polyA_site      1578
                     /gene="Gm38999"
                     /gene_synonym="C7H19orf84; Gm52993"
                     /note="major polyA site"
ORIGIN      
        1 agacacgatt gaggagatgg acgagctaga agacggggct ttgagtaatg gggacaacct
       61 ttctttgccg tcagctggga ctgagtcatg gcctacttca gccaccccag gcctgccacc
      121 ctcgctcctg agcaccctag acccaaccca cctggggctt ccagagcaac tggcctctgt
      181 cactgtcccc atccgcctag acaccctgtc ctacctccta cacagtgccc tcctggggac
      241 ctacaacctc cagcagtctt taccgccatg ctcctgcact gcccagccaa gccacatctg
      301 gccagacaca gtcaggaggc cacccaggag atcgggccag gcccgtggag gctgggaagt
      361 tcgacgcagg ccttcccggg gctggggcag gggcaggggc aggggcaggg tctgggcaca
      421 gtcacaaagg ggccctgaaa gagctgaaga gcgggagagg aacatggcag gggagcctgg
      481 ggctggcccc agtaccccac cagtgacacc accatcccag gatgggcaga aggaagctgg
      541 aggactatct gaagactggg aggcagacta ctaggaccct gaagagcatc cagtacctgg
      601 tcaccccggg atgttcccag agcccagtgt tcttacagct tcagaggtac cttgagaaat
      661 atcattccta cagtctcccc agcccccaga ctacaatctc tgaaagcctc ctgcagatca
      721 cctggtaaag cctgaaccag ccctagaaat aagaaaactc catgcccagc ctcacaacat
      781 cccaacccca gctacttact attccactcg gaatagtaat gttctcagtg ctctcaaggc
      841 tgctccaacc ccatttccag accaaaccat ccccccccaa agcccttcct ctctccattc
      901 cacagtcagc ccatcttcac caactcccca ctcacctttt ggccttcagt ccaaacccac
      961 tctcatcccc aatttgttta tttgccggtt tgcttgtttt ttgttttgtt ttgttttgtt
     1021 ttgttttgtt ttgttttgtt ttgtgctatc ctcccgggtg ccagtcaaac tcgggagtaa
     1081 gttgtaactc taaagtaaat tgcaatcctc ttttattttt atcttgagaa agagtctcag
     1141 caagtatcca agctggcctt gaacttgcga tcctcttgtc tcagctttct gggattaaag
     1201 gtctggtcca caaggcctcc tgtcattccc agctttgctt tgttttaaaa ccggttatcc
     1261 cagtcttgct ctctcagtca gggttaagat tggtgtgaac tactagcctg ggctcactcc
     1321 ccacatcctg gtcctcatct gcagttatca tatctcatat tcacctttac ttaacaacag
     1381 tgctctgctc aactccagct ccagccccag cagctgctgt gtcccagccc tgctctgaca
     1441 agcccttgat cctaccgtac aaagaacccc ttggcctgac atgtctagat acctatatcc
     1501 acccgtgcca ttgctgcttc ctgtcccttg agctgggaag cccaggttga acaataaaac
     1561 ggtgtctatc tactctta
//
