LOCUS       NM_001301259            4596 bp    mRNA    linear   ROD 10-OCT-2020
DEFINITION  Mus musculus predicted gene, 38667 (Gm38667), mRNA.
ACCESSION   NM_001301259
VERSION     NM_001301259.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4596)
  AUTHORS   Wang X, Su H and Bradley A.
  TITLE     Molecular mechanisms governing Pcdh-gamma gene expression: evidence
            for a multiple promoter and cis-alternative splicing model
  JOURNAL   Genes Dev 16 (15), 1890-1905 (2002)
   PUBMED   12154121
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC020968.3, AF464177.1 and AC129315.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            readthrough transcript    :: includes exons from GeneID 12939,
                                         93716
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2283              AC020968.3         185327-187609
            2284-2477           AF464177.1         145-338
            2478-2536           AC129315.3         25335-25393
            2537-2625           AC129315.3         33579-33667
            2626-4596           AC129315.3         40217-42187
FEATURES             Location/Qualifiers
     source          1..4596
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18"
     gene            1..4596
                     /gene="Gm38667"
                     /gene_synonym="Pcdha7-g"
                     /note="predicted gene, 38667"
                     /db_xref="GeneID:103611159"
                     /db_xref="MGI:MGI:5621552"
     exon            1..2477
                     /gene="Gm38667"
                     /gene_synonym="Pcdha7-g"
                     /inference="alignment:Splign:2.1.0"
     CDS             96..2852
                     /gene="Gm38667"
                     /gene_synonym="Pcdha7-g"
                     /codon_start=1
                     /product="protocadherin alpha 7-gamma"
                     /protein_id="NP_001288188.1"
                     /db_xref="GeneID:103611159"
                     /db_xref="MGI:MGI:5621552"
                     /translation="MRIKRQQFEMVNLRGYNWKSQQLLLFLIIVAAWEAGSGQLHYSV
                     PEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDRE
                     ELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDNPPMFPATQKALFILESRLLDSR
                     FPLEGASDADVGSNALLTYRLSTNEHFSLDVPPNHEQVKPLGLVLRKPLDREEAAEIR
                     LLLTATDGGKPELTGTVQLLITVLDVNDNAPVFDRSLYTVKLPENVPNGTLVIKVNAS
                     DLDEGVNGDVMYSFSSDVSSDIKSKFHMDTVSGEITVIGIIDFEESKAYKIPLEARDK
                     GFPQLPGHCTILVEVVDANDNAPQLTVSSLSLPVSEDSQPGRVVTLISVFDRDSGANG
                     QVTCSLTPHIPFKLVSTFKNYYSLVLDSALDRETIANYDVIVTARDGGSPSLWATASV
                     SVEVADVNDNAPLFAQPEYTVFVKENNPPGAHIFTVSAMDADAQENALVSYSLVERRV
                     GERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLD
                     ENDNAPTLLGPLANGVGGTMNEVVSRALVPGQVVAKVRAVDEDSGYNAWLSFELQPVA
                     GGVRSPFRVGLYTGEISTTRALEETDALRQCLLVLVKDHGEPSLTATATVLLSLVDSG
                     QTQKVSSKVSAGASRVDQRLVDVNVYLIIAICAVSSLLVLTLLLYTALRCSATPTDGA
                     CAPGKPMLVCSSAVGSWSYSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSSTDNQAPP
                     NTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGA
                     GTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
                     KEKK"
     exon            2478..2536
                     /gene="Gm38667"
                     /gene_synonym="Pcdha7-g"
                     /inference="alignment:Splign:2.1.0"
     exon            2537..2625
                     /gene="Gm38667"
                     /gene_synonym="Pcdha7-g"
                     /inference="alignment:Splign:2.1.0"
     exon            2626..4596
                     /gene="Gm38667"
                     /gene_synonym="Pcdha7-g"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttgggcttca ctcttcggtt gctccacaat ggccagcatc tcgggactgg aatgaagaaa
       61 taaaaaacct ccagaatttg ggataactgt cgcgaatgag aataaaacgt cagcaatttg
      121 aaatggtaaa cctgagagga tacaactgga agagccaaca attactcctg ttcctgataa
      181 ttgtggcagc ctgggaggca gggagcggcc agctccacta ctccgtccca gaggaagcca
      241 aacacggcac cttcgtgggc cgcatcgcgc aggacctggg gctggagctg acggagctgg
      301 tgccccgcct gttcagggtg gcgtccaagg accgcgggga ccttctggag gtaaatcttc
      361 agaatggcat tttgtttgtg aattctcgca tcgaccggga ggaactgtgc gggcggagcg
      421 cggagtgtag catccacctg gaggtgatcg tggacaggcc gctgcaggtt ttccacgtgg
      481 aggtggaggt gaaggacatt aatgacaacc ctcccatgtt tccagcgaca caaaaggctc
      541 tgtttatcct ggagtccaga ctgcttgact cgcggtttcc actagagggc gcgtcagatg
      601 cagatgtcgg ttccaatgct ctgctgactt acagactgag caccaatgaa catttctctc
      661 tggatgtacc gcccaaccac gagcaggtga aacctcttgg gctggttttg cggaaacctt
      721 tagacagaga agaagctgca gagattcgct tattgctcac ggccaccgac ggaggcaaac
      781 cggagctgac aggcaccgtt caattactca tcaccgtgct ggatgtcaat gacaatgctc
      841 cagtttttga cagatctctg tatactgtga aattgccaga aaacgttcca aatggaacat
      901 tggtaatcaa agtcaatgcc tcagatttgg acgaaggcgt gaatggggac gttatgtact
      961 cattttctag tgatgtttct tcagatataa aatccaagtt ccacatggac actgtgagtg
     1021 gagagattac agttatagga attattgatt tcgaagagag taaagcttac aagattccat
     1081 tggaggcacg tgataaaggg ttcccacaac tgcctggaca ctgtaccatt cttgtggaag
     1141 ttgtagatgc taatgacaac gctccacagt tgacggttag ttccttgtct ctcccagtat
     1201 ccgaggacag tcaacctgga agagtcgtca ctttaattag cgtatttgac cgtgattccg
     1261 gtgccaatgg gcaggtgacc tgctccctga ctcctcatat ccccttcaag ctggtgtcca
     1321 cattcaaaaa ttactattcg ctcgtgctgg acagtgctct ggaccgagag accatcgcta
     1381 actatgatgt gattgtgacc gctcgcgatg gcggttcgcc ctccctgtgg gccacggcca
     1441 gcgtgtccgt ggaggtggct gatgtgaacg acaatgctcc actgtttgcg cagcctgaat
     1501 acacggtgtt cgtgaaggag aacaacccgc ctggtgcgca catctttaca gtgtcagcga
     1561 tggatgctga tgcgcaggag aatgcgctgg tgtcctactc gctggtggaa cggagggtgg
     1621 gcgagcgctt gctgtcgagc tatgtgtctg tgcacgcgga gagcggcaag gtgttcgctc
     1681 tgcagcctct ggaccatgag gagctggaac tgctgcagtt ccaggtgagc gcgcgggatg
     1741 ctggtgtgcc tgccctgggc agcaatgtga ctctgcaggt gtttgtactg gacgagaacg
     1801 acaatgcacc taccctgctg gggcctttgg ctaacggggt tggtggcaca atgaatgagg
     1861 tagtatcaag agctttggtg cctggtcagg ttgtggcgaa agtccgggcc gtagatgagg
     1921 actctggata caatgcgtgg ttgtcttttg agctgcagcc agttgcgggt ggagttcgta
     1981 gtcccttccg tgtaggcctg tacacaggag aaatcagcac gacacgtgct ctggaggaga
     2041 cagatgcctt gcggcagtgc ttgttagtgt tggtgaaaga tcacggagaa ccttctctga
     2101 ccgccacagc cacggtgttg ctttctctgg tagacagcgg ccaaacacag aaggtctcat
     2161 ctaaggtgtc agctggagcc tccagagtgg atcagaggct ggtggatgtc aacgtgtacc
     2221 tgatcatcgc catctgcgcg gtgtccagcc tgttggtgct cacgctactg ctgtacacag
     2281 cgctgcgctg ttcggcgacg cccaccgatg gagcctgtgc tccagggaag cccatgctgg
     2341 tgtgctccag cgcggtgggg agctggtcat actcgcagca gaggcgacag agagtgtgct
     2401 ctggagaagg cccacccaag accgacctca tggccttcag ccccagccta cctcagggtc
     2461 ccagctctac agataaccaa gccccgccca acactgactg gcgtttctct caagcccaga
     2521 gacccggcac gagcggatcc caaaatggtg atgaaactgg cacctggccc aacaaccagt
     2581 ttgatacaga gatgctgcaa gccatgatct tggcctctgc cagcgaagct gctgatggga
     2641 gctctaccct gggagggggc gctggcacca tgggtctgag cgctcgatac ggaccccagt
     2701 ttaccctgca gcacgtgcct gactaccgcc agaacgtgta catccctggc agcaatgcca
     2761 cgctgaccaa tgccgctggc aaacgagatg gcaaggctcc agcaggtggt aatggcaaca
     2821 agaagaaatc gggcaagaaa gagaagaagt aatatggagg ccaggccttg aaccacaagg
     2881 cagcctccct ccccagccag tccagctcgt ccttacttgt acccaggcct cagaatttca
     2941 gggctcaccc caggatactg gtaggagcca gggccatgct ccccgttggg aaacagaaac
     3001 acgtgcccaa gccaacaccc cctctctata ccctagggag ttgaatatgc aaagagagtt
     3061 ctgctgggac ccccctattc aatcagtgat tgtacccaca tgggtagcag ggtttgtgtg
     3121 tgtggacata cacacacaca cacacacaca cacacacaaa ccatgccaca ctcccttagt
     3181 tacagctgaa ctcctccatc ttccaaccca ggcaggctta tccatctcct gccgccctct
     3241 ccccacccca cccactcctt cagtccctct ctttgagcaa ggtagctggg ctgttggggt
     3301 gaccggtgag ctaagccggc tcctagttct gaacggtagg gagagtatta caatcttttg
     3361 gcctctcctt cagttcagct ttcccccaaa gcatggtttg gtaccagtct tctcttttcc
     3421 ttccagagcc tgagaccaat gcttaagttt tgggggaaca ggcaccctcc ctctggtact
     3481 gatgatgctt gctggatttt gggaaggcat tttgctacta agcctctttt caatgcctgg
     3541 ggacaactag tcttttgttt ttcattgttt gatgttccca ctgcatgctg tgacttccct
     3601 acacctcaaa gaagagactc ctttgcatgt ctggagacag tagggggtgg taaactaaag
     3661 ggaagttgag agtgtatact gctgggagtg gggcagtgga caaaacagcc tgttaatagg
     3721 gtcttgcaag gggctctgta tgtacccagg ggactggctc aatcctcaca ttctagccat
     3781 agacaaacac caggccagac ccctccattc tggttcagcc tgggcagctt gggctgagcc
     3841 accaggacca atggatttaa gctgacattt cagtccaaga cgacgacttc taagtgagtt
     3901 taagaccaga gaggaaagag gggcctctgt gggtgctggg tactccagag gtgcccttgg
     3961 tgggaggacc agtggtctta gcaggaaggg gggcccagca aggtcattct tggaccctgg
     4021 gtctagtcca gtagctagaa aaagggacca agtggccata aagtcccagc caatgatggg
     4081 gcttttccag tgggcccctg tagacctcaa gcccctggcc tccaccttac caggtgccat
     4141 ttcttctcag aaggccactg cccaggcccc caggccgccc ccttgtggcc agagaacggt
     4201 taaagccccc cagtgcctcc ttgtgcatag aacttcctct gccctagccc ttacagtagt
     4261 gtagaagatc cccctccccc gctggtgtag aatagccaat agtatagtgt ggtgtgcttt
     4321 tacgtgatgg cgagtgggca gcgggcggtg ggctgtacac agccgtctgt cctttgaatc
     4381 tcaatctgcc tgcgcggccc gtgctgtgtt ttgtgctgtg tccacacgct gcggcgaccc
     4441 ctccctgtac tgacttctct ataaaaagct tctcttcgca tagtcacgta gctcctgccc
     4501 atcccccttc cgatatctct cgcaagtttt atactctaat atttatatgg cttttttctt
     4561 cgaaaattaa aaataaaaaa atggtttctt ctgaaa
//
