LOCUS       NM_001301256            4626 bp    mRNA    linear   ROD 10-OCT-2020
DEFINITION  Mus musculus predicted gene, 38666 (Gm38666), mRNA.
ACCESSION   NM_001301256
VERSION     NM_001301256.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4626)
  AUTHORS   Wang X, Su H and Bradley A.
  TITLE     Molecular mechanisms governing Pcdh-gamma gene expression: evidence
            for a multiple promoter and cis-alternative splicing model
  JOURNAL   Genes Dev 16 (15), 1890-1905 (2002)
   PUBMED   12154121
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC020968.3, AF464176.1 and AC129315.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            readthrough transcript    :: includes exons from GeneID 12937,
                                         93713
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2285              AC020968.3         179156-181440
            2286-2598           AF464176.1         1-313
            2599-2655           AC129315.3         33611-33667
            2656-4626           AC129315.3         40217-42187
FEATURES             Location/Qualifiers
     source          1..4626
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18"
     gene            1..4626
                     /gene="Gm38666"
                     /gene_synonym="Pcdha6-g"
                     /note="predicted gene, 38666"
                     /db_xref="GeneID:103611158"
                     /db_xref="MGI:MGI:5621551"
     exon            1..2507
                     /gene="Gm38666"
                     /gene_synonym="Pcdha6-g"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..2882
                     /gene="Gm38666"
                     /gene_synonym="Pcdha6-g"
                     /note="protocadherin alpha 6-gamma"
                     /codon_start=1
                     /product="protocadherin alpha 6-gamma precursor"
                     /protein_id="NP_001288185.1"
                     /db_xref="GeneID:103611158"
                     /db_xref="MGI:MGI:5621551"
                     /translation="METKQEVFEMDFTTEGRLGTRCMLLSLLLLAAWEAGSGQLHYSV
                     PEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDRE
                     ELCGRSVECSIHLEVIVDRPLQVFHVEVEVRDINDNPPVFSVKEQRMLIYESRLPDSL
                     FPLEGASDADVGLNSMLTYKLSPSEYFGLDVKSNSDGNKQIRLLLKKSLDREDAPEHK
                     LLLTATDGGKPELTGSVQLLVTVLDVNDNAPTFQHPEYEVRILENSDNGTTVIRLNAS
                     DKDEGTNSAISYSFNRLVPPKTLEQFSIDADTGEIITQGNLDFEQVDVYKIHVDATDK
                     GHPPMVGHCTVLVKVLDENDNVPQITLTSLSLPVREDAALSTVIALISVSDLDSGSNG
                     QVTCSLSPHVPFKLVSTFKNYYSLVLDSALDRETTADYQVVVTARDGGSPSLWTTASV
                     SVEVADVNDNAPSFAQPDYTVFVKENNPPGAHIFTVSAMDADAQENALVSYSLVERRV
                     GERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLD
                     ENDNAPTLLGPWTPGSGGVVSELVSPSVGAGQVVTKVRAVDADSGYNAWLSYELHPLA
                     GGTRSLFRVGLYTGEISTTRALEEADAPRHRLLVLVKDHGEPALIATATVLVSLVENS
                     QTPKASSRAQGATGQEVSLVNVNVYLIIAICAVSSLLVLTLMVYTALRCSVPPTEGVC
                     GAGKPVLVCSSAVGSWSYSQQRRQKVCSGEGPPKTDLMAFSPSLPPCPVVGEHQDLND
                     DHCSRQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASASEAAD
                     GSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGG
                     NGNKKKSGKKEKK"
     exon            2508..2566
                     /gene="Gm38666"
                     /gene_synonym="Pcdha6-g"
                     /inference="alignment:Splign:2.1.0"
     exon            2567..2655
                     /gene="Gm38666"
                     /gene_synonym="Pcdha6-g"
                     /inference="alignment:Splign:2.1.0"
     exon            2656..4626
                     /gene="Gm38666"
                     /gene_synonym="Pcdha6-g"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tggatcttcc aagactgctg aaggatggcg aatgcagaag aactgaatcg atagactttg
       61 aatcatacag aattttatgc agagaaaaaa atcttctaat ggaaacaaag caagaagtat
      121 ttgaaatgga ttttaccact gaaggccgac tgggaacacg gtgtatgctg ctctcgctcc
      181 tgctcctcgc agcctgggag gcagggagcg gccagcttca ttactccgtc ccagaggagg
      241 ccaaacacgg caccttcgtg ggccgcatcg cgcaggacct ggggctggag ctgacggagc
      301 tggtgccccg cctgttcagg gtggcgtcca aggaccgcgg ggaccttctg gaggtaaatc
      361 tgcagaatgg cattttgttt gtgaattctc ggatcgaccg ggaggagctg tgcgggcgga
      421 gcgtggagtg tagcatccac ctggaggtga tcgtggacag gccgctgcag gttttccacg
      481 tggaggtgga ggtgagggac attaatgata acccgcctgt gttctcagta aaggagcaaa
      541 gaatgttaat ttacgaatct aggctgccag attctttgtt tccactagag ggcgcatcag
      601 atgctgatgt tggattaaat tctatgttaa cctataaact cagtcccagc gaatactttg
      661 ggctagatgt gaaatcaaac agcgatggca acaaacaaat tagactcttg ttgaaaaaat
      721 ccttggacag agaggatgct cctgagcata agctactgct gacagccacg gatggaggca
      781 aacctgagct cacaggctct gttcagctgc tggtcactgt gctggatgtg aatgataacg
      841 cccctacttt ccagcaccct gagtatgaag tgagaatctt ggaaaactca gacaacggaa
      901 cgacagttat tagactgaat gcttctgaca aggatgaagg gacgaattca gcaatttcgt
      961 actcttttaa tagactggtg ccgcccaaga ctcttgagca gtttagcata gatgcagata
     1021 caggagaaat cataactcaa ggaaatttgg actttgagca agtagatgtc tacaaaatcc
     1081 acgttgatgc gacggacaaa ggacaccctc cgatggtggg ccattgcact gttttagtga
     1141 aggtattgga tgagaacgac aatgtgcctc agatcacttt gacttcctta tccctgcctg
     1201 ttcgagagga cgctgcactg agtactgtca ttgctctaat tagcgtttcg gatctggact
     1261 ctggatccaa cgggcaggtg acctgctccc tgagtcctca tgtccccttc aagttggtgt
     1321 ccaccttcaa gaattactat tcgcttgtgt tggacagcgc cctggaccga gagaccacag
     1381 ctgactatca ggtggtggtg acagcgcggg acgggggttc tccttctttg tggaccacgg
     1441 ctagcgtgtc tgtggaggtg gccgatgtga acgacaatgc gccttcattt gcgcagcctg
     1501 attacacggt gttcgtgaag gagaacaacc ctcctggagc gcacatcttc acagtatcgg
     1561 cgatggacgc ggatgcgcag gagaacgcgc tggtgtccta ctcgctggtg gagcggaggg
     1621 tgggcgagcg cttgctgtcg agctatgtgt ctgtgcacgc ggaaagcggc aaggtgttcg
     1681 ctctgcagcc tctggaccat gaggagctgg aactgctgca gttccaggtg agcgcgcggg
     1741 atgctggtgt gcctgccctg ggcagcaatg tgactctgca ggtgtttgtg ctggatgaga
     1801 acgacaatgc gcccacgctg cttggacctt ggacaccagg atctggtggt gtagtgagcg
     1861 aacttgtgtc accttcagtg ggtgctggcc aggtggtcac aaaggtgcgt gcagtagatg
     1921 cggattctgg ctataatgcc tggctgtctt atgagctgca tcctttagca ggtggaacgc
     1981 ggagtctgtt tagggtaggt ctgtacacgg gcgagatcag taccacgcgt gcccttgagg
     2041 aggcagatgc accacgccat cgcctattag tgctggtgaa ggaccacggg gagccagcgc
     2101 tgattgccac agccactgtg ttagtgtctc tggttgagaa cagccagact ccaaaagcct
     2161 cttcgcgagc gcaaggtgcc actggccagg aagtttcgtt agtgaatgtc aacgtgtacc
     2221 tgatcattgc catctgtgcg gtgtccagcc tactagttct aaccctcatg gtatacaccg
     2281 cactgcggtg ctcagttcca cctacagagg gtgtgtgcgg ggcagggaag cctgtgctgg
     2341 tgtgctctag tgcggtaggg agctggtcct actcacagca gaggagacag aaggtttgtt
     2401 ctggagaggg accacccaaa accgatctca tggccttcag cccgagtctt cctccttgtc
     2461 cggttgtggg tgagcatcag gatttgaacg acgatcattg ctcaagacaa gccccgccca
     2521 acactgactg gcgtttctct caagcccaga gacccggcac gagcggatcc caaaatggtg
     2581 atgaaactgg cacctggccc aacaaccagt ttgatacaga gatgctgcaa gccatgatct
     2641 tggcctctgc cagcgaagct gctgatggga gctctaccct gggagggggc gctggcacca
     2701 tgggtctgag cgctcgatac ggaccccagt ttaccctgca gcacgtgcct gactaccgcc
     2761 agaacgtgta catccctggc agcaatgcca cgctgaccaa tgccgctggc aaacgagatg
     2821 gcaaggctcc agcaggtggt aatggcaaca agaagaaatc gggcaagaaa gagaagaagt
     2881 aatatggagg ccaggccttg aaccacaagg cagcctccct ccccagccag tccagctcgt
     2941 ccttacttgt acccaggcct cagaatttca gggctcaccc caggatactg gtaggagcca
     3001 gggccatgct ccccgttggg aaacagaaac acgtgcccaa gccaacaccc cctctctata
     3061 ccctagggag ttgaatatgc aaagagagtt ctgctgggac ccccctattc aatcagtgat
     3121 tgtacccaca tgggtagcag ggtttgtgtg tgtggacata cacacacaca cacacacaca
     3181 cacacacaaa ccatgccaca ctcccttagt tacagctgaa ctcctccatc ttccaaccca
     3241 ggcaggctta tccatctcct gccgccctct ccccacccca cccactcctt cagtccctct
     3301 ctttgagcaa ggtagctggg ctgttggggt gaccggtgag ctaagccggc tcctagttct
     3361 gaacggtagg gagagtatta caatcttttg gcctctcctt cagttcagct ttcccccaaa
     3421 gcatggtttg gtaccagtct tctcttttcc ttccagagcc tgagaccaat gcttaagttt
     3481 tgggggaaca ggcaccctcc ctctggtact gatgatgctt gctggatttt gggaaggcat
     3541 tttgctacta agcctctttt caatgcctgg ggacaactag tcttttgttt ttcattgttt
     3601 gatgttccca ctgcatgctg tgacttccct acacctcaaa gaagagactc ctttgcatgt
     3661 ctggagacag tagggggtgg taaactaaag ggaagttgag agtgtatact gctgggagtg
     3721 gggcagtgga caaaacagcc tgttaatagg gtcttgcaag gggctctgta tgtacccagg
     3781 ggactggctc aatcctcaca ttctagccat agacaaacac caggccagac ccctccattc
     3841 tggttcagcc tgggcagctt gggctgagcc accaggacca atggatttaa gctgacattt
     3901 cagtccaaga cgacgacttc taagtgagtt taagaccaga gaggaaagag gggcctctgt
     3961 gggtgctggg tactccagag gtgcccttgg tgggaggacc agtggtctta gcaggaaggg
     4021 gggcccagca aggtcattct tggaccctgg gtctagtcca gtagctagaa aaagggacca
     4081 agtggccata aagtcccagc caatgatggg gcttttccag tgggcccctg tagacctcaa
     4141 gcccctggcc tccaccttac caggtgccat ttcttctcag aaggccactg cccaggcccc
     4201 caggccgccc ccttgtggcc agagaacggt taaagccccc cagtgcctcc ttgtgcatag
     4261 aacttcctct gccctagccc ttacagtagt gtagaagatc cccctccccc gctggtgtag
     4321 aatagccaat agtatagtgt ggtgtgcttt tacgtgatgg cgagtgggca gcgggcggtg
     4381 ggctgtacac agccgtctgt cctttgaatc tcaatctgcc tgcgcggccc gtgctgtgtt
     4441 ttgtgctgtg tccacacgct gcggcgaccc ctccctgtac tgacttctct ataaaaagct
     4501 tctcttcgca tagtcacgta gctcctgccc atcccccttc cgatatctct cgcaagtttt
     4561 atactctaat atttatatgg cttttttctt cgaaaattaa aaataaaaaa atggtttctt
     4621 ctgaaa
//
