LOCUS       NM_001243109            1130 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus predicted gene 3404 (Gm3404), mRNA.
ACCESSION   NM_001243109 XM_001476873 XM_003084630
VERSION     NM_001243109.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1130)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   2  (bases 1 to 1130)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   3  (bases 1 to 1130)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC093356.15.
            
            On or before Jul 23, 2011 this sequence version replaced
            XM_001476873.2, XM_003084630.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK015946.1, BY715511.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-160               AC093356.15        155523-155682
            161-363             AC093356.15        155864-156066
            364-411             AC093356.15        156604-156651
            412-605             AC093356.15        157296-157489
            606-1130            AC093356.15        157751-158275
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 85.23 cM"
     gene            1..1130
                     /gene="Gm3404"
                     /gene_synonym="100041554"
                     /note="predicted gene 3404"
                     /db_xref="GeneID:100041554"
                     /db_xref="MGI:MGI:3781582"
     exon            1..160
                     /gene="Gm3404"
                     /gene_synonym="100041554"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..952
                     /gene="Gm3404"
                     /gene_synonym="100041554"
                     /codon_start=1
                     /product="uncharacterized protein LOC100041554"
                     /protein_id="NP_001230038.1"
                     /db_xref="CCDS:CCDS57404.1"
                     /db_xref="GeneID:100041554"
                     /db_xref="MGI:MGI:3781582"
                     /translation="MFSCFQGSRGSGHKKAKSGFLVRFWRRLIRPLTHFRHASHSEPK
                     VCSQNEQEPDSLPKRPQFNYDSQEYVVQMIHYIPAAIQKRDHICITIFLGVYRTYAST
                     WEVLDLLMRTYASFRPDCIKDQQTKRAIFRFLFGWFKKYPQDFYESPDLAVVRQFIDY
                     VKRNVPSSDVDRARELLSVLEDQEAIELQIEQAPEPSEQDASGRQETLAPRPASETEP
                     QGDKQPREDPELVKGAVLDPFEPKATIELPPSLHQAVPTSDGTLSPVDVTADEATGVA
                     ADVSPARQLFVSYTVQLGTPDFVIPLPEVDI"
     exon            161..363
                     /gene="Gm3404"
                     /gene_synonym="100041554"
                     /inference="alignment:Splign:2.1.0"
     exon            364..411
                     /gene="Gm3404"
                     /gene_synonym="100041554"
                     /inference="alignment:Splign:2.1.0"
     exon            412..605
                     /gene="Gm3404"
                     /gene_synonym="100041554"
                     /inference="alignment:Splign:2.1.0"
     exon            606..1130
                     /gene="Gm3404"
                     /gene_synonym="100041554"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttgtctgga agtcctagag ggagcaagat gttctcctgt ttccagggtt ccagaggctc
       61 cggccacaaa aaagccaaga gcggtttcct tgttcgcttt tggagacgtt tgattcgccc
      121 tctgacacac ttcaggcatg cttcccacag tgagcccaag gtctgttctc aaaatgaaca
      181 ggagccagac tctctgccca agcgccccca gttcaactat gacagccaag aatacgtggt
      241 acaaatgatc cactacattc cagctgctat tcagaaacgt gaccacatct gtatcaccat
      301 atttcttggc gtctaccgaa catatgccag cacttgggag gtgctggacc tgctgatgag
      361 aacgtatgca tccttccggc ctgactgtat aaaggaccag caaactaaga gagccatatt
      421 caggtttctg ttcggctggt ttaagaaata cccccaggat ttttatgagt ccccagacct
      481 ggctgttgtg aggcagttca ttgactatgt gaagcgcaat gtgccttcct cagatgtaga
      541 tagagccagg gagctgctct ccgtgctgga agatcaggag gcaatagagc tacagattga
      601 gcaagctcca gagccctcag agcaggatgc ctctgggagg caggagactc tggctccgag
      661 gccagcttct gagacagagc cacagggaga caagcaaccc cgagaggatc ctgagcttgt
      721 gaaaggagca gttctggatc cctttgaacc aaaagccaca atagagctgc ctccgtcttt
      781 acatcaagct gtgcccacat cagatggtac actctcacct gtagatgtta ctgcagatga
      841 ggcgacaggt gtggctgcag atgtttcacc tgccaggcag ttatttgtgt cttacactgt
      901 gcagttaggt acaccagatt tcgtcatccc tctgcctgag gttgacatat agttaggaga
      961 atggtctgca gagttctacc cagctgaggt tccccaccta agcttatctc atgtttttag
     1021 agacaatatc ttatagcttt gttggattct ttgtttttca tattgttgtt ttcatttttg
     1081 tgtttttaat tatgtttgaa tattaataaa aataattatt tgttcttctt
//
