LOCUS       NM_001370882            1978 bp    mRNA    linear   ROD 10-OCT-2024
DEFINITION  Mus musculus leucine rich repeat containing 78 (Lrrc78), mRNA.
ACCESSION   NM_001370882 XM_006511608
VERSION     NM_001370882.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1978)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1978)
  AUTHORS   Harrow,J.L., Steward,C.A., Frankish,A., Gilbert,J.G.,
            Gonzalez,J.M., Loveland,J.E., Mudge,J., Sheppard,D., Thomas,M.,
            Trevanion,S. and Wilming,L.G.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            AC161257.2.
            
            On Jun 8, 2019 this sequence version replaced XM_006511608.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.112455.1,
                                           SRR5189670.127165.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-269               AC161257.2         167694-167962       c
            270-479             AC161257.2         163884-164093       c
            480-632             AC161257.2         162099-162251       c
            633-781             AC161257.2         160341-160489       c
            782-922             AC161257.2         157150-157290       c
            923-1068            AC161257.2         156049-156194       c
            1069-1164           AC161257.2         149267-149362       c
            1165-1297           AC161257.2         139572-139704       c
            1298-1404           AC161257.2         137053-137159       c
            1405-1517           AC161257.2         134770-134882       c
            1518-1978           AC161257.2         128685-129145       c
FEATURES             Location/Qualifiers
     source          1..1978
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9"
     gene            1..1978
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /note="leucine rich repeat containing 78"
                     /db_xref="GeneID:102635744"
                     /db_xref="MGI:MGI:5579435"
     exon            1..269
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /inference="alignment:Splign:2.1.0"
     exon            270..479
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /inference="alignment:Splign:2.1.0"
     CDS             300..1529
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /codon_start=1
                     /product="uncharacterized protein LOC102635744"
                     /protein_id="NP_001357811.1"
                     /db_xref="CCDS:CCDS90644.1"
                     /db_xref="GeneID:102635744"
                     /db_xref="MGI:MGI:5579435"
                     /translation="MPRAKERKQKPKGAAPSVVPALQKFLKTYQKHCVQSRTSVCPAI
                     HRDLKSSIDREQILGKFMLVRAGNSSASTLPVSLEPLLMTIRDEGYTLGKEICIWGLQ
                     LTNPEIARLALFLEQKGHTTCPVTTLEIIDCKMDLWSLGRLGKALQFSSLHFLVLDYC
                     KFGNEELESIFSGLESNRRLQGLSMRYCGLGPQSGPRLGSVISHSGICELRLDGNHLQ
                     SSGALALLRPIAEYAETQGKDQPTLALLHAGNPLQPSEVCRGASSTLSQIMKSSETLT
                     AKRTSQKKSGQGGIKKQVKSLAQAGPWIVTLCLADNSIDGTGREGEPLLEFTRTVTSL
                     IKYSTHLREMDLGNNVLGETAAVDILEALRVRKTGKLPPLKVTVTPRISSDTFRSIWK
                     LSKKSNRRRKKKKKVRN"
     exon            480..632
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /inference="alignment:Splign:2.1.0"
     exon            633..781
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /inference="alignment:Splign:2.1.0"
     exon            782..922
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1068
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /inference="alignment:Splign:2.1.0"
     exon            1069..1164
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /inference="alignment:Splign:2.1.0"
     exon            1165..1297
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /inference="alignment:Splign:2.1.0"
     exon            1298..1404
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /inference="alignment:Splign:2.1.0"
     exon            1405..1517
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /inference="alignment:Splign:2.1.0"
     exon            1518..1978
                     /gene="Lrrc78"
                     /gene_synonym="Gm28729"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgactcttg gacagtgctc agcacctgca cctgtggggt agcgggggtt tcaaaggtcc
       61 cgggaggaca ctgccctcca caccctacac cccacacccc acaggacctg ctctgtgcgt
      121 ccctgcctcc aggctaacgg ggattctctg tgctctctca agctctgact ctcacctcct
      181 ctgactgtgt cctcctgtcc tgtttctgga gtgaagtaca tcggagggag agtggcctcc
      241 agatgagatg ataaagccta actgcacaga aaccaagggg aattgaaccc tgcaaaacaa
      301 tgccgagagc gaaagaaaga aaacaaaaac ccaaaggggc agccccttcg gtggttcccg
      361 ctcttcagaa gttcctgaag acctaccaga agcactgcgt acagtctcgg acctccgtgt
      421 gtcccgccat ccacagggac ctgaagagca gcattgacag agagcagatc ctcgggaaat
      481 ttatgcttgt gagggctggt aactcctcag ccagcactct gcccgtctcc ttggaacctt
      541 tgctcatgac catccgagat gagggctaca cactgggcaa ggagatctgc atctggggcc
      601 ttcagctgac gaacccggag atcgccagac tcgctttgtt tctggagcag aaggggcaca
      661 ccacttgccc agtgactaca ttggaaatca ttgattgcaa gatggatctg tggtctctgg
      721 ggcgacttgg gaaagctctg cagttcagca gtttgcactt cctggtcctc gactactgca
      781 agtttggaaa tgaagaactt gagagtatct tctcaggcct ggagagcaac cgaaggctcc
      841 agggcctcag tatgcgctac tgtgggctgg ggccccagag tgggccaagg ctgggctctg
      901 ttatcagcca cagcggcatt tgtgagctgc gcctggatgg aaatcacttg cagagttctg
      961 gggccctggc tctcctcaga cctatagcag aatacgcaga gacgcagggg aaggaccagc
     1021 ctaccttggc actgctacat gctggaaatc cccttcagcc ttccgaagtg tgccggggag
     1081 caagctcaac tttgagtcag attatgaaat cttccgaaac tttaacagcg aaaagaacct
     1141 cgcagaagaa aagtggacaa ggaggaatca agaaacaagt taaaagcctg gcacaagctg
     1201 gcccttggat cgtgacacta tgtttggcag ataacagcat agatgggaca gggagggagg
     1261 gagagcctct gctggagttc actcgaactg taacaagctt gatcaaatac tcaactcact
     1321 taagagagat ggaccttggg aacaatgtcc tgggagaaac ggctgcagtg gacatcctgg
     1381 aagcactgag agtcaggaag acgggtaaac taccaccctt aaaagttaca gtcactcccc
     1441 ggatctcttc ggacaccttc agatctatct ggaaacttag caagaaatct aataggaggc
     1501 gtaaaaagaa gaaaaaggta agaaactgaa tacagatgcc attatttttt cccaaatgaa
     1561 tgatgcctat ttccatggcg agacagacag agctagaaag atgcagcttg ttgtacacaa
     1621 acgtttctca ttgctgtcac ccgcttttac gtcctaaaat tcatcaacac cacttagtaa
     1681 tctattctgt cacacaatca gtctctaaac ggtggatttc gttctgtctc tgctgccact
     1741 aagtgacctg gagcaggcca aagcttcact ggtgacatgt gacccaggaa gacattgctg
     1801 tgggagacct agcatgccta gcatggggaa agttaccgtg cccatttttc tcaggaactg
     1861 tgatgcacct ctgtgtgtcg ggtggcagag gctccttatc ctgggcacca acttgattga
     1921 aggctgatga caagaaggaa cagcatctgc aagatcgatg tgtgggaaaa tgaaaaaa
//
