LOCUS       NM_001085419            2405 bp    mRNA    linear   ROD 14-FEB-2024
DEFINITION  Mus musculus PRAME like 60 (Pramel61), mRNA.
ACCESSION   NM_001085419 XM_001476560
VERSION     NM_001085419.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2405)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2405)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   3  (bases 1 to 2405)
  AUTHORS   Ko,M.S., Kitchen,J.R., Wang,X., Threat,T.A., Wang,X., Hasegawa,A.,
            Sun,T., Grahovac,M.J., Kargul,G.J., Lim,M.K., Cui,Y., Sano,Y.,
            Tanaka,T., Liang,Y., Mason,S., Paonessa,P.D., Sauls,A.D.,
            DePalma,G.E., Sharara,R., Rowe,L.B., Eppig,J., Morrell,C. and
            Doi,H.
  TITLE     Large-scale cDNA analysis reveals phased gene expression patterns
            during preimplantation mouse development
  JOURNAL   Development 127 (8), 1737-1749 (2000)
   PUBMED   10725249
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC132592.1, AL928630.15 and AU020510.1.
            
            On Nov 27, 2007 this sequence version replaced XM_001476560.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC132592.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849381,
                                           SAMN01164133 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1651              BC132592.1         2-1652
            1652-2080           AL928630.15        173850-174278
            2081-2405           AU020510.1         1-325               c
FEATURES             Location/Qualifiers
     source          1..2405
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 77.98 cM"
     gene            1..2405
                     /gene="Pramel61"
                     /gene_synonym="Gm13102"
                     /note="PRAME like 60"
                     /db_xref="GeneID:100041077"
                     /db_xref="MGI:MGI:3703005"
     exon            1..101
                     /gene="Pramel61"
                     /gene_synonym="Gm13102"
                     /inference="alignment:Splign:2.1.0"
     exon            102..411
                     /gene="Pramel61"
                     /gene_synonym="Gm13102"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..1627
                     /gene="Pramel61"
                     /gene_synonym="Gm13102"
                     /codon_start=1
                     /product="uncharacterized protein LOC100041077"
                     /protein_id="NP_001078888.1"
                     /db_xref="CCDS:CCDS57309.1"
                     /db_xref="GeneID:100041077"
                     /db_xref="MGI:MGI:3703005"
                     /translation="MSFKDPPTLQQLARRSLLKDEALTISALPNLPVQLFPPLFKDAF
                     TSRQRKILSLMVATWPFPVLPVGALCGIDHLETLKAVLDGLDLLMSQKDRPSRWNLQV
                     LDLRDAHQDFWDGWAGLLHEVCSQDVFGKNQPVGNHPIPGGKQTISIKMNLSLKYCRR
                     HSHCENLNYLYYWAKQRKDVIQVIFEKLEFTGKHCLRLKLWRLLKLSFVASIQELTIK
                     SIHWDIYNLALIASCLGQMKNLQKLILMNIRRPSSLTDLQEARIITEIFSEFSKLHKL
                     QHLYVNDVYFLKERLDLMLRCFERPLETLTITYCKLSESDMRYLSQCPSIHQLKYLDM
                     SYTTFKPSSHRFLGFLGSLLERLTATLQTLKLECFHLTDSRIRDLLPGLSQCSQLTEV
                     DFVENKFSMVSLKTLLQHTANLTQLTLEKYPAPDEVYDDSLCVIPDRFVQLCSELMNT
                     LKGVRQPKQVYFESTIYSPNFEYLVYNLEGMVSSEPLRRRGRGMVIYISG"
     exon            412..1011
                     /gene="Pramel61"
                     /gene_synonym="Gm13102"
                     /inference="alignment:Splign:2.1.0"
     exon            1012..2405
                     /gene="Pramel61"
                     /gene_synonym="Gm13102"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcttttgcc tgcttgccct gtgggactga gcgactgtta gatccttgga cttccattca
       61 cagctactac tggaacattg ttgggaattg ggctgcagac tcatcagcct acctgaaagc
      121 tacaatgagc ttcaaggacc caccaacact ccagcagctg gcaagaagaa gcctgctaaa
      181 agatgaagcc ttgactatct ctgctctgcc gaacctgcct gtgcaactct tcccaccact
      241 cttcaaggat gcattcacca gcagacaacg taagatcctg agcctgatgg tggcaacatg
      301 gcccttccca gtccttcctg tgggagctct gtgtgggatt gatcacctgg agaccctgaa
      361 agctgtacta gatggccttg atttgctgat gtcacaaaag gatcgaccta gcaggtggaa
      421 cctacaagtg cttgatttgc gagatgccca ccaggacttc tgggatggtt gggctggact
      481 acttcatgaa gtctgctctc aagatgtctt tggcaagaac caaccagtgg gaaatcatcc
      541 catcccaggg gggaaacaga ccataagtat aaaaatgaat ctttccctca agtactgccg
      601 acgacactct cattgtgaaa acctaaacta tttgtattat tgggccaagc agagaaaaga
      661 tgtgatacag gtgatctttg agaagctgga gtttacaggc aagcactgtc tccgactgaa
      721 gttgtggcgg ttgttgaagt tgtcttttgt agcctcaatc caggaattga caataaagtc
      781 catacactgg gatatatata accttgcatt gatagcctct tgcctgggcc agatgaaaaa
      841 cctccagaaa ctcattctca tgaacatcag gagaccttct tcccttacgg acctacagga
      901 agcccgtatt attacagaga tcttttccga gttctccaaa ctgcataagc tccagcatct
      961 ctatgtgaat gatgtctact tcctgaaaga acgcctggac ctaatgctca ggtgttttga
     1021 gcgtccatta gagaccctta ctatcactta ttgcaagctt tcagaatcag acatgaggta
     1081 tctgtcccag tgtccaagca tccatcagct caaatacctg gacatgagtt acaccacatt
     1141 caagccttca agtcatcgat ttctaggatt tctcggaagc ctactagaaa gactgacagc
     1201 tactctgcag acattaaaat tggagtgctt tcacctcacg gactcccgaa tccgtgacct
     1261 tctgcctggg ctgagccagt gttcccagct cactgaagtc gattttgtgg agaacaaatt
     1321 ttccatggtc agcctgaaaa cgctgctgca acatactgcc aacctcacac agctgaccct
     1381 ggagaagtac cctgcacctg atgaagtcta tgatgacagt ctttgtgtta ttccagacag
     1441 atttgtacaa ctttgttctg agcttatgaa cacactcaag ggtgtaaggc agccaaagca
     1501 ggtctacttt gagagtacaa tatattcacc taattttgaa tacctcgtgt ataatttgga
     1561 gggcatggta tcttctgagc ctttaagaag gagaggtcgt gggatggtga tatatatcag
     1621 tgggtaggaa cacccgactg ctcttccgaa ggttagaagt tcaaatccca gcacccacat
     1681 ggtggctcac aaccatccat agcaagatct gactccctct tctggattgt ctgaagacag
     1741 ctacagtgta cttacatata ataaataaat gaatctttaa aaaggaaaaa aaaattaaaa
     1801 aaaaaaggag aggtcattgc tgggctctga taaatggagg gcaggtctca agagattcat
     1861 tagagttata gaacatatgt attcaagcat tttggaatgt acttttggaa agataattat
     1921 ttcattttct ttgaatgtca gtcaaattct tctgatttga ggtagttgtg ttgagatgga
     1981 aaaccatgac cttattttca gcctaatgtc tacagtacag acacaccctt taacagcaat
     2041 tgtatctgaa aattgtaggg ctgcattcca gcactgtctg agtatgaggg acactagaag
     2101 tagggaaggg gataaagagt gaggacatta taaagatcat aatggacttg aataggaggt
     2161 ctctgtttca ttctccctgc agatggcacc caccttttgg ctctcccctt actgttctag
     2221 agtatatgga tatattttta tgaagtataa atctgactaa acttggagta cttttgtatt
     2281 agactgttat cactattaag ctgtatctct ttcttgggga ggtccagtag cctgctatta
     2341 tcttctacca ccactgttac cattataatt tctcataggt tctaataaat ctgttttgaa
     2401 taagc
//
