LOCUS       NM_001277919            1687 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus predicted gene 11780 (Gm11780), mRNA.
ACCESSION   NM_001277919
VERSION     NM_001277919.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL732514.10.
            
            On Mar 1, 2022 this sequence version replaced NM_001277919.1.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1687              AL732514.10        88889-90575         c
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 2.54 cM"
     gene            1..1687
                     /gene="Gm11780"
                     /note="predicted gene 11780"
                     /db_xref="GeneID:622019"
                     /db_xref="MGI:MGI:3650485"
     exon            1..1687
                     /gene="Gm11780"
                     /inference="alignment:Splign:2.1.0"
     CDS             739..1254
                     /gene="Gm11780"
                     /note="protein tyrosine phosphatase 4a2 pseudogene;
                     protein tyrosine phosphatase 4a2-like"
                     /codon_start=1
                     /product="Protein tyrosine phosphatase type IVA 2"
                     /protein_id="NP_001264848.1"
                     /db_xref="GeneID:622019"
                     /db_xref="MGI:MGI:3650485"
                     /translation="MHHVAPVEICYNNMRFLITHNPTNSTMHKFTEELKNYGVSTLVR
                     VCDATYDKTLVENCGIHVLDLPYNDGAPPPDEIVDNWLDLLKNKFREEPGSCVAVHCV
                     AGLGRAPVLVALALIECGMKNEDAVQFIRQKRRGAFNSKQLLFLEHYRPKLRTRSLSR
                     FRDSTVHCCIQ"
ORIGIN      
        1 attggctggg gtgcagcgtc catggatagc cgatggggta ggagctttgt caagctcaga
       61 gcaaggcgag gccctctctc tgcgtctgcg tggtggtggc aaaaacgtgg tggtagccag
      121 ggaggcagga tggtctcaag gtcatgtgcc gccagcagga ctggcagggt gtctaaggca
      181 taggctagca gagaaactgc agttctccag tcaccgcagg actttggtgg gaaacacatt
      241 gtggatttat ggctattcca aatttgaaga ccaacttctg ccaggctcag cacaacttcc
      301 ctgacaaatg accttggggg cgagctctat gtgaggtatt caactgtgcc tcgaagactc
      361 tggacaccga gactatcctc aaaaataact gcaagtatac tttctttaat gactctgcta
      421 aaatcaagca tcaagtaaac aaaagtagaa ggcagccacc accattgtct cactcgtgtc
      481 tgaaagtagg ctcggtgggt aaattcggta tgtagctgga tggtttggaa atttgaaggt
      541 acccatctgc agacactgag tgaggcccag gctgaattcg agcaaattct aaatactttt
      601 ctacctatct tggagaagct tcatactgaa taaaaaagcc cagtaacaaa aataaaaaac
      661 aataatagac tttttgttga gcctaatgtt ctcatttttc catcaggcag gcacgcacgt
      721 acactctgat ttgccataat gcatcatgta gccccagtgg agatttgcta taacaacatg
      781 cgttttctga taactcacaa ccccactaat agtacgatgc acaagttcac agaggaactc
      841 aagaactacg gagtgtcaac tttagtcaga gtttgtgatg ccacatatga taaaactcta
      901 gttgaaaact gtggcatcca tgttctagat ctgccataca acgacggagc cccgccccct
      961 gatgagatcg tggataattg gctagacctg ctaaaaaaca aattccgtga ggagcctggt
     1021 tcctgtgtgg cagtgcactg tgtggctggg ctaggaaggg cacccgtgct ggtggcactt
     1081 gctttgattg aatgtggaat gaaaaatgaa gacgcagttc agtttatccg gcagaaacga
     1141 aggggagctt tcaactccaa acagctgctt tttttggagc actaccggcc taaattgagg
     1201 acccggtcac tgtcgcgctt cagggattct accgtgcact gctgcatcca gtaggatcct
     1261 agctaaaggc tttctctact atgatgttgt aaggacactc gtatctggaa agtgcatctg
     1321 gaatctttcc tgttcatcaa tgagtggtca attctactaa ttggtcctga agcaaacaat
     1381 ggaaaaatgc ttctataaaa tgagttcaga taaaaattag aaggaaaaac taacatacct
     1441 ttcagagcaa ggacaaagaa aatctggacc ctgcctctcg ctcctgcatg ctaaaagcac
     1501 tcttgaacac acactcatca tctgctgtgt tgtgacagaa acaaaaggct tcacaagagg
     1561 ctgtgtgttc atgtaatctt gggctttcat tctcacaact atcatcaaaa taaatctctt
     1621 gataaatcac ctagccttgg acattttatt ataacaggaa gaaataaagc tgctgtttgt
     1681 caactca
//
