LOCUS       NM_001126317             782 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus predicted gene 1140 (Gm1140), mRNA.
ACCESSION   NM_001126317 XM_001474142 XM_356330
VERSION     NM_001126317.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Morimoto K, Numata K, Daitoku Y, Hamada Y, Kobayashi K, Kato K,
            Suzuki H, Ayabe S, Yoshiki A, Takahashi S, Murata K, Mizuno S and
            Sugiyama F.
  TITLE     Reverse genetics reveals single gene of every candidate on Hybrid
            sterility, X Chromosome QTL 2 (Hstx2) are dispensable for
            spermatogenesis
  JOURNAL   Sci Rep 10 (1), 9060 (2020)
   PUBMED   32493902
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Gallardo TD, John GB, Shirley L, Contreras CM, Akbay EA, Haynie JM,
            Ward SE, Shidler MJ and Castrillon DH.
  TITLE     Genomewide discovery and classification of candidate ovarian
            fertility genes in the mouse
  JOURNAL   Genetics 177 (1), 179-194 (2007)
   PUBMED   17660561
  REMARK    GeneRIF: Transcripts highly enriched in ovary; gene identified as
            candidate female fertility factor.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX530092.15.
            
            On or before May 7, 2008 this sequence version replaced
            XM_001474142.1, XM_356330.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.135036.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-109               BX530092.15        70480-70588         c
            110-179             BX530092.15        69942-70011         c
            180-214             BX530092.15        69758-69792         c
            215-332             BX530092.15        67852-67969         c
            333-432             BX530092.15        66866-66965         c
            433-531             BX530092.15        65993-66091         c
            532-636             BX530092.15        60179-60283         c
            637-782             BX530092.15        59926-60071         c
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 34.81 cM"
     gene            1..782
                     /gene="Gm1140"
                     /note="predicted gene 1140"
                     /db_xref="GeneID:382217"
                     /db_xref="MGI:MGI:2685986"
     CDS             1..690
                     /gene="Gm1140"
                     /codon_start=1
                     /product="synaptonemal complex protein 3-like"
                     /protein_id="NP_001119789.1"
                     /db_xref="CCDS:CCDS53082.1"
                     /db_xref="GeneID:382217"
                     /db_xref="MGI:MGI:2685986"
                     /translation="MPPKGKKAKSKSVKRPQDSSDTQSDDVIQRRVPRTPAEQPVVIE
                     ISDESTSSDQDDQQARESVQKTAKKRQGDVTESHLAKKKQFCQDVVTSVKRLSEKLVS
                     IYKRQKRERTMFHSNYSKSLQSLFQQWDMSVEKVGQEEDSFINSSHQHEKIIYNTMMA
                     QKATIDQAKAISDQFLKNIQELEEKHKLLDALEQNRLENEMKNLKKKLVADNHQQDLA
                     VLESCLHSMFS"
     exon            1..109
                     /gene="Gm1140"
                     /inference="alignment:Splign:2.1.0"
     exon            110..179
                     /gene="Gm1140"
                     /inference="alignment:Splign:2.1.0"
     exon            180..214
                     /gene="Gm1140"
                     /inference="alignment:Splign:2.1.0"
     exon            215..332
                     /gene="Gm1140"
                     /inference="alignment:Splign:2.1.0"
     exon            333..432
                     /gene="Gm1140"
                     /inference="alignment:Splign:2.1.0"
     exon            433..531
                     /gene="Gm1140"
                     /inference="alignment:Splign:2.1.0"
     exon            532..636
                     /gene="Gm1140"
                     /inference="alignment:Splign:2.1.0"
     exon            637..782
                     /gene="Gm1140"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgccaccca aggggaagaa ggctaaaagc aaaagtgtga agcgcccaca ggattcttcg
       61 gatactcaat ctgatgatgt catccagcgc agagttcccc gcacaccagc agagcagccc
      121 gtggtgatcg agatcagtga tgagagtact tcatcagatc aagatgatca gcaggcaagg
      181 gaatctgttc agaagacggc aaaaaaacgt caaggtgacg ttacagagtc acaccttgca
      241 aagaaaaaac agttttgtca agatgtagta acttctgtta agcgcctgag tgaaaaactt
      301 gtcagcattt ataaaaggca aaaaagggaa aggactatgt tccattccaa ctattctaag
      361 agcctccagt ctttgtttca acagtgggac atgagtgtgg aaaaagttgg gcaagaagaa
      421 gacagtttta ttaattcatc ccatcaacat gagaagataa tttataacac tatgatggct
      481 cagaaagcaa ccatagatca agcaaaagct atttctgatc aatttctaaa gaatatccaa
      541 gaacttgagg agaagcacaa acttctcgac gctcttgagc aaaacagatt ggaaaacgaa
      601 atgaaaaacc tgaagaagaa gcttgtggca gataatcatc aacaggactt ggcagtttta
      661 gaatcctgtc ttcattctat gttctcctag aacagtgaag aagataagct gtgatcgtat
      721 gtcatgtgac atacataaaa cattccatac actaccaaat attatggtag aaattggccc
      781 at
//
