LOCUS       XM_030246469            1471 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus predicted gene 10840 (Gm10840), mRNA.
ACCESSION   XM_030246469
VERSION     XM_030246469.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1471
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..1471
                     /gene="Gm10840"
                     /note="predicted gene 10840; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 4 ESTs, 5 long SRA reads, and 94% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:115487818"
                     /db_xref="MGI:MGI:3642918"
     CDS             1..873
                     /gene="Gm10840"
                     /codon_start=1
                     /product="collagen alpha-1(I) chain"
                     /protein_id="XP_030102329.1"
                     /db_xref="GeneID:115487818"
                     /db_xref="MGI:MGI:3642918"
                     /translation="MALQRCLVALEEMPSQEGSARGSQEVSRGLGRVPPDPRAPSPGL
                     DVQPLDSAGPDLLPGQAALPPAPALRDPRPRNPTPPRAGPTGPTRASGSPRAQRANRQ
                     AASAPQRSAPLPPAAVGLTGPGLRRGAGVGRCGTASGASGAGASCRRCQWSPSGSRRL
                     TAAPPPPAPAPRPPIGSARPGPPPGEAAADPPLCFVFPLLAVPPPLSAPTSLSQPALS
                     RLPEPTSSAARGEGTTAGTESQISGGDEFSLRSTRKALPARTFRNGLGLYCLGLPVSR
                     CERSPISSAPFLRS"
ORIGIN      
        1 atggctcttc agaggtgctt ggtggccctg gaggagatgc cgagccaaga gggttctgca
       61 aggggaagtc aggaggtcag cagaggtctg ggcagggtac cgccagaccc gcgcgccccc
      121 tcaccgggct tagacgtcca gcccctagac agtgctgggc ccgacctcct gcctggccag
      181 gctgcgctgc ctcccgcgcc cgctcttcgg gaccccagac cccgaaaccc caccccacca
      241 cgagccggcc ctacgggacc gacgcgagcc tcgggatccc cgcgagcgca acgcgcgaac
      301 cgccaggcgg cgtcggcccc gcaacgctcc gcgcccctcc ccccggccgc cgtgggtctc
      361 accgggcccg gcctgcgccg cggggcgggg gtcggtcgct gcgggaccgc ctcgggtgca
      421 agtggcgcgg gcgcgagctg ccgccgctgc cagtggtccc cgagcggcag ccgccgcctc
      481 accgcggcgc cgcccccgcc ggcccccgcc ccgcgcccgc ccattggctc cgcgcgcccg
      541 gggccgcctc cgggagaagc cgccgccgac ccccctctgt gctttgtctt tcccttgctc
      601 gccgtccccc cgcctttgtc tgcccccaca tcgctttcac agcccgcgct ctcccgcctc
      661 ccggagccaa cctcctctgc cgctcgtgga gaagggacga cggcggggac cgaatcgcag
      721 atctcgggag gagacgagtt cagcctgcga tcgacacgca aggctcttcc ggcgcggacc
      781 ttcagaaatg gcctgggcct ttactgcctc ggtttacccg ttagccgttg tgaacgcagt
      841 cccattagct ccgccccctt cttgcgctct taagacccag tagtttgagg caccccactg
      901 tggggactcg ggaggcaggt ccactggcag ccacggagtc ctacagagga agatggaggc
      961 ggctcgtagt ccctccgtat accccgatgt taggccaagg gagccggcgg tgggcccatg
     1021 tcactactga aggggtgtga cagatccgct atccgagaac tgcagccttg tggtttccga
     1081 aatcaccagc ccccttaagc tcgacatcct aaatggtttc tgtgaccaga ttttgtggga
     1141 ttagtaacct cgggccttgc catggcccag gtcaagcccc tatctgaaag gacccacttc
     1201 cttgcatcaa gcacaccttg ttccaccgaa gggagcagag agccatttag gctggagttg
     1261 tttagagaac aaagtgcaac aagagctgct tttgccgctc cgccccagcc cactgcacag
     1321 caggttgagg ggaaggactc taggcagcag catctagggc acagacttct gctgagggct
     1381 ttgcctgaag cccagctgga gactgtcttc acacagccct cggcgacata tttccacacc
     1441 cctgtaacag gaataaaact ggtggctcta g
//
