LOCUS       XM_030254958            4977 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus predicted gene 10461 (Gm10461), mRNA.
ACCESSION   XM_030254958
VERSION     XM_030254958.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030254958.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4977
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..4977
                     /gene="Gm10461"
                     /note="predicted gene 10461; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 2 ESTs, 170 long SRA reads, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:115490127"
                     /db_xref="MGI:MGI:3642164"
     CDS             1..882
                     /gene="Gm10461"
                     /codon_start=1
                     /product="collagen alpha-1(II) chain"
                     /protein_id="XP_030110818.1"
                     /db_xref="GeneID:115490127"
                     /db_xref="MGI:MGI:3642164"
                     /translation="MHYHFTGSKIVSWSLPVCKSWKQLSRSKTQTKFSLTQEDREPNS
                     RGGGVARHLKVAADCNTSQHPQTQTKENFINRSWFAIKPSTTRRSPARSTSSTPRSRQ
                     LLRASGDTDLQPLGREGAAALPSGPHSGVTPRPLGWRVQRRHHIGWTTIRTPAESGST
                     GQGGDRGTGQAGSEPRRRDTHARQPDRGRGEVSPQLPDSGTSRRTAAGAAAPREAREQ
                     EGGCRGLELPGPGQLPTSRGHAASLPESGRTRTGRRGEKAAGRGGRPRVPLPSPPPGR
                     GAPGGSDGGAAGPGRFT"
ORIGIN      
        1 atgcattatc atttcacagg cagcaaaatc gtctcctggt ctcttccagt ctgcaaaagc
       61 tggaagcaat tatcaagaag caaaacacaa acaaaatttt cgttgacaca ggaggacaga
      121 gaaccgaact cacggggagg cggagtggca aggcacttaa aagtggccgc tgattgtaac
      181 acgtcccaac accctcaaac ccaaacaaag gaaaacttta taaacaggtc gtggtttgca
      241 atcaaaccaa gtacaacccg ccgctcaccc gctcgctcca cgagttccac tcctcgctcc
      301 agacagttgc tgcgggcgtc cggcgacaca gacctccagc cgctaggacg agaaggggcc
      361 gctgccctac cctctggtcc tcattcggga gtgaccccac gtcctttggg gtggagggtg
      421 cagcggcggc accacatagg ctggaccact atccggactc ccgcagaatc gggaagtact
      481 ggacagggcg gagaccgagg cactgggcaa gcaggtagtg agcccaggag acgagacact
      541 cacgcccgcc agccagaccg cgggagggga gaagtttctc ctcaacttcc agactccggg
      601 accagtaggc ggacagcggc aggggcggcg gcgcctcgag aagcccggga gcaggagggt
      661 ggatgccgag gcctagagct gcccggtccg ggtcagctgc ctacgtcgcg aggccacgcc
      721 gcgagcttac ctgagtccgg ccgcactcgc acgggtcgcc gcggggagaa ggcggccggc
      781 cgaggtggac gcccgcgggt ccctctccct tctccacctc caggtcgcgg ggcgccagga
      841 ggcagcgacg gcggcgcagc cggcccggga cgctttactt gaggaggagg gaactcccgg
      901 acgcccgcac cccgcggcct ccctctctcc tcctctcgcc gccggccccg cccctccgct
      961 ccggatcgcg cgcggggcgg gggttgcggc tacctgcgcg cgcccgctca ccggaactcg
     1021 cgctctgctg tctgctggga gcgccttccg gcgcgggagc tctgcgcggg gtccgcgggc
     1081 cgctgggagg cccggccgtg tcgtgcctgc cggcccaaca tggcgccagg ggtcaggcgt
     1141 gctcccgagg gggcgtgagg agaaagcagc agcggcatgt ggttccctgc cttgcccgca
     1201 cgccgactac cgcaacgggc gaagcggggc tccgcctggc tcaccgaaac actgaggggt
     1261 gtggggcttt gttttcggag ggtgatcggg gttggggttc tttggagaaa ggttgactgt
     1321 tcatttctca gctttgtgcc tccgcaccct ttgtcactga tagtaaaatc acagtcgaac
     1381 cgcgtgagcc atcagggcag tgctgacacc ttggttctcg tctggccgca gaagcttcct
     1441 gttgactgta ggtcgaacca gccttgccgc gcgagtagaa ccgaacctga gttgtgttgg
     1501 caattctccc aggaatggtg gctctcactt agagtgggac agcattgtat ttgatcctcg
     1561 taatagggaa cccggacagg cactgtgact cttcttgaca gctatgaaag ctgacgtttg
     1621 ggccccttga agtgaagaag tcaagatgaa aggttttttg tttgttttcc ctccgaaggc
     1681 cttgcatcgt tttttctgct tgccttgtag aaaaaggaag ggtttaggag gaactgaggt
     1741 acaagattga gagggtcaaa agacaatcta gaagtactcc tgctaaaggc acgtctgcct
     1801 tatcacactc ttaatttccc ttttgtattt cctctttggt ggggttattc gaagtattaa
     1861 tgtgggactg ttggtttcct ttgtggtttt cagagaaatt cagcatcatc tttgacatat
     1921 caactccgtc agtagtctgg tactttagca acttaaatgc acacagcttt aaaaagtttc
     1981 ttcagagaaa ggaatgggaa tccacatgaa caactatgtg tgatgtagcg cggtgcttta
     2041 ttttgccatt gactggtgca ttaaggggtt tttttgtttt gttttgtttt tttttttttt
     2101 ttgttttttt gtttttttgt ttttctctgt atagctctgg ctgtcctgga acccactttg
     2161 tagaccaggc tggcctcgaa ctcagaaatc cccctgcctc tgcctaccaa gtgctaggat
     2221 taaaggcgtg cgccaccacc gcccagcaag ttttttcttg aaactagaac gttagttact
     2281 tgagctgttg cctttctaaa cctacagata aaatagaaat atatttgtga ccctaaactc
     2341 tcccaattta aaagacaaca aacaaaaacc ctctcaatgt tagtctaacc tgttttgaat
     2401 ttgttttata ttttattttg ttttactttg cttgcttttt tgagacagag tcttgtgtag
     2461 cccaggatag ctttgaactt gctgtgtagc tgaggatgat ttttgagccc ctccttctcc
     2521 tgtctctacc tcccagtttc tggggttaca agtaggtacc atcacacaca atttctgtac
     2581 tttaaggtag ggagagagta tcaaaaatac acctacaact taaaggttac atttaatggc
     2641 tattttagaa atattcttaa agatggtgac aggatctggg aaattttgct gggaaatttt
     2701 gttgttatag aaactagtca tagctaaaac cctgtttctg aaatggtcag gtgagtgtcg
     2761 gctcatgcat ccctcttcac aatgttacag tgtgttaaga cctatcttga aacttctggg
     2821 aaaatcagcc ctaggaagga aggggaaggc cagtggaaaa tttgaactat attaggtatt
     2881 tctaaaacta aggtgttctt acttatcaaa gttggctgga agtttgaatt attagaagtt
     2941 gaactgatga tgaccaatgg aacctatgat tctgcctgga aatgttcttg cttagaataa
     3001 agtgctttcg gggagagatt tgcccacttc actaaggtcc tggtaatgag tttttcttcc
     3061 tgcaacagtg ggaagccatg cactgtatga tctccaccat ccctactacg agacagactt
     3121 ttcttttctt tttttttttt ccttttaaag atttatttat ttttatgtga gtacagtgta
     3181 gctgttttca gacacaccag aaggggcgtc agatctcatc acagatggtt gtgagccacc
     3241 atgtggttgc tgggaattga actcaggacc tctgggagag cagccagtgc tcttaaccgc
     3301 taagccatct ctccagacct agaaagagtt ttcaaagata acttttacgc gctaggagca
     3361 ggatgtcctt gtgtacacat ggcatgtatc tgtgctgtcc tggctttgcc ttttccagct
     3421 ggccatgcct actccaagcc ccacccagaa agagcacaag aaccatccta agctaagatt
     3481 tgtaggttca ggcatttctt ctttagtgtg aggctcatta taacaaactc tctgaagcag
     3541 tacagttcat tacttactca aactttgtgt tttcataacc ttgtagtggg catggtggat
     3601 ttgttttccc ttcctctcaa ctgaccttcc tccaataaat ttcttttcag cttaaattaa
     3661 gtagaaagtc tgttctttgc aagtaagaaa ctcaatttag accccagctc ttgggaggtg
     3721 gaggtaaaga atcaggagtc ctaagccatt tactgagttt caagctaact taggctcaac
     3781 ctgtctcaac caaaagtccc agaaaacaaa actaaagcaa aacaaaacac aatttagcgt
     3841 ctactgcttt gtattgctga ctgactatca cctcagctct gagggcagga tttcctgctt
     3901 tctgttcaga ctaggggtgg gacacttaca ggggaaccga ttttcacaga cagggaagga
     3961 gtagcagcac agccagagtg gaggcaggaa cttaaaggag ccctaacata gtaatgtgat
     4021 tcttgccagg cacaaggctg acacatccta agtgaggcag tcaaggctcc cagatcatgg
     4081 catcactttc cccctgagca ctaactcaaa cctcagactt ctactcagca caattttgac
     4141 agcagctcct ttccttccat gtgccatgtt tgtggtttct atagtttttc ttgagtgttc
     4201 tggcctgtgt tttctggtat ctgcagctga tgtgtaataa cattggcatt gcttctggcc
     4261 ttgagtttaa cctccactaa gttgcttcca gtttgctact tctaaggact tttacacatg
     4321 ggttaggaga agtagaacct aactttgctt agaggcaaga agttgaagtt agaatgttta
     4381 ccagagctga tggtttagaa aagaaactaa atcaggctct atctttaaag ttcactgaat
     4441 aggctcatga agcataaaat atattaggga gctttttata attagatgtt ttccaagatg
     4501 gtgctagctt gtttttttgt ttttttgttt taaatttatt atatatgagt acactgtagc
     4561 tgtcttcaga cacaccagaa gagggcatca gatctcatta tgggtggttg tgagccacca
     4621 tgtggttgct gagatttgaa ctcaggactt ttggaagatc agtcagtgct cttgcccgct
     4681 gagccatctc tccagcccac tagcttgggt tttagacaat gtatttagaa tgtatatttt
     4741 tctaactttc tttaaatctc ctttctaaag ctgaacagat tttgttgcaa ctttagctat
     4801 aaagatcatt ttctcatata tatctgacaa aattgtaaac cctgacttac tgacataact
     4861 acaatgtttt taatgcttta acaaaatgta ttcactcttc tttgacttgt atgtgagtag
     4921 agcttttgat gagttgaaat tgttcatttt tttttcttta ctaaaaagaa acacata
//
