LOCUS       NM_001039095            1212 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus glycosyltransferase 6 domain containing 1 (Glt6d1),
            transcript variant 1, mRNA.
ACCESSION   NM_001039095 XM_130140 XM_913856
VERSION     NM_001039095.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1212)
  AUTHORS   Park,S., Shimada,K., Fujihara,Y., Xu,Z., Shimada,K., Larasati,T.,
            Pratiwi,P., Matzuk,R.M., Devlin,D.J., Yu,Z., Garcia,T.X.,
            Matzuk,M.M. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched
            genes are dispensable for male fecundity
  JOURNAL   Biol Reprod 103 (2), 195-204 (2020)
   PUBMED   32561905
REFERENCE   2  (bases 1 to 1212)
  AUTHORS   Turcot-Dubois,A.L., Le Moullac-Vaidye,B., Despiau,S., Roubinet,F.,
            Bovin,N., Le Pendu,J. and Blancher,A.
  TITLE     Long-term evolution of the CAZY glycosyltransferase 6 (ABO) gene
            family from fishes to mammals--a birth-and-death evolution model
  JOURNAL   Glycobiology 17 (5), 516-528 (2007)
   PUBMED   17298992
  REMARK    Erratum:[Glycobiology. 2007 Aug;17(8):14G]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL731682.20 and BX649340.3.
            
            On Mar 23, 2023 this sequence version replaced NM_001039095.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC111823.1, AK016765.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                AL731682.20        16276-16350         c
            76-161              AL731682.20        14617-14702         c
            162-209             AL731682.20        11506-11553         c
            210-347             BX649340.3         92725-92862         c
            348-1212            BX649340.3         91443-92307         c
FEATURES             Location/Qualifiers
     source          1..1212
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 18.07 cM"
     gene            1..1212
                     /gene="Glt6d1"
                     /gene_synonym="4933411C14Rik; GT6m7"
                     /note="glycosyltransferase 6 domain containing 1"
                     /db_xref="GeneID:71103"
                     /db_xref="MGI:MGI:1918353"
     exon            1..75
                     /gene="Glt6d1"
                     /gene_synonym="4933411C14Rik; GT6m7"
                     /inference="alignment:Splign:2.1.0"
     exon            76..161
                     /gene="Glt6d1"
                     /gene_synonym="4933411C14Rik; GT6m7"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..1017
                     /gene="Glt6d1"
                     /gene_synonym="4933411C14Rik; GT6m7"
                     /note="isoform 1 is encoded by transcript variant 1;
                     glycosyltransferase 6 domain-containing protein 1; novel
                     glycosyltransferase family 6 protein"
                     /codon_start=1
                     /product="glycosyltransferase 6 domain-containing protein
                     1 isoform 1"
                     /protein_id="NP_001034184.1"
                     /db_xref="CCDS:CCDS15791.1"
                     /db_xref="GeneID:71103"
                     /db_xref="MGI:MGI:1918353"
                     /translation="MKAKRRILLQLLTFCLFLLLLAKIHFRNHQEEELLLSDWFNPRR
                     RLDVITTTDWLAPIIWEGTFDRKVLETYFRKQNITVGLAVFAVGSLTDKYLDPFLQSA
                     SKFFMPGYRVIFYIMVDKYLQLQEMEHNPLQSFQVLKIGKERWWSNFDLMRMKILSEH
                     IRDHIRYEVDFLFSMNINMVFQSEFGVETLSTSVAQLHPWWYFRKRTNLPYERKPTSV
                     AHIPFGLGDFYYAGAIIGGVPFQVLDFAQQYLKGVFLDTENGVNSTYEKYLNKYFFLN
                     KPTKLLSPEYSWDPTFNLPRHVWFVKIAHHPIDTL"
     exon            162..209
                     /gene="Glt6d1"
                     /gene_synonym="4933411C14Rik; GT6m7"
                     /inference="alignment:Splign:2.1.0"
     exon            210..347
                     /gene="Glt6d1"
                     /gene_synonym="4933411C14Rik; GT6m7"
                     /inference="alignment:Splign:2.1.0"
     exon            348..1212
                     /gene="Glt6d1"
                     /gene_synonym="4933411C14Rik; GT6m7"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1184..1189
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Glt6d1"
                     /gene_synonym="4933411C14Rik; GT6m7"
                     /note="hexamer: AATAAA"
     polyA_site      1212
                     /gene="Glt6d1"
                     /gene_synonym="4933411C14Rik; GT6m7"
                     /note="major polyA site"
ORIGIN      
        1 agagctatcc tccctaggaa acaaatgtcc tccacggaca tttttgcctg tctcccaata
       61 ccaccctgat ccaaggaagg aatgaaggct aaaaggagga ttttattaca attactgact
      121 ttctgccttt tcctgctgct gctggcaaag atccacttca ggaaccacca ggaagaggaa
      181 cttctgctct cagactggtt taaccccagg agacgcctgg atgtcatcac gaccacagac
      241 tggctggccc ccatcatatg ggaaggcacc tttgacagaa aggtcctgga gacatatttc
      301 aggaagcaga acatcaccgt gggtttggct gtgtttgctg ttggcagtct cactgacaag
      361 tacctggacc cattcttgca atcagccagc aagttcttca tgcctggcta tcgagtgatc
      421 ttctacatca tggtggataa gtacctgcag ctacaagaaa tggagcacaa ccctctgcaa
      481 tcctttcaag tactcaaaat aggcaaggag aggtggtgga gcaactttga cctcatgcgc
      541 atgaaaatct tgtctgagca catccgggat cacatcagat atgaagtgga tttcctcttc
      601 agcatgaaca tcaacatggt cttccaaagt gagtttgggg tagagactct gagcacatct
      661 gtggctcagc tccatccttg gtggtatttc cgaaagagga cgaatctacc ctatgagagg
      721 aaacctacat cagtagccca cattcccttt ggactggggg acttctacta tgctggtgcc
      781 attataggtg gagtgccctt tcaggtcttg gactttgctc agcaatactt gaaaggtgtt
      841 ttcttggata ctgaaaatgg agttaacagt acctatgaaa agtacctcaa caaatatttt
      901 ttcctcaaca aacctaccaa gcttctatcc ccagaataca gctgggaccc taccttcaac
      961 ctccctcggc atgtgtggtt tgtcaagatt gctcatcacc ccatagacac cttatgacgc
     1021 accagtgctg ttggactgca gagcaaacca cagcagggcc tcagagacac agactgtctt
     1081 gttaaaaacc cacatttcag aggcccaata acatatagta tttccaaaat caattgttct
     1141 ttcttgcaat tttaaattgt ccaacttgac tgaatctaga atgaataaaa tgtgatactt
     1201 catgtccatt ca
//
