LOCUS       NM_001310768            3698 bp    mRNA    linear   ROD 31-JUL-2024
DEFINITION  Mus musculus galactosidase, beta 1-like 2 (Glb1l2), transcript
            variant 2, mRNA.
ACCESSION   NM_001310768 XM_006510301
VERSION     NM_001310768.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3698)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
REFERENCE   2  (bases 1 to 3698)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BG061307.1, AK143057.1, CF737161.1, AK033400.1 and AI324066.1.
            
            On Jul 19, 2015 this sequence version replaced XM_006510301.2.
            
            Transcript Variant: This variant (2) lacks an alternate in-frame
            exon in the 5' coding region compared to variant 1. It encodes
            isoform 2, which is shorter than isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK143057.1, SRR9219380.58086.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-63                BG061307.1         9-71
            64-600              AK143057.1         2-538
            601-601             CF737161.1         546-546
            602-2442            AK143057.1         540-2380
            2443-2443           AK033400.1         2033-2033
            2444-3688           AK143057.1         2382-3626
            3689-3698           AI324066.1         1-10                c
FEATURES             Location/Qualifiers
     source          1..3698
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 11.56 cM"
     gene            1..3698
                     /gene="Glb1l2"
                     /note="galactosidase, beta 1-like 2"
                     /db_xref="GeneID:244757"
                     /db_xref="MGI:MGI:2388283"
     exon            1..171
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..1996
                     /gene="Glb1l2"
                     /EC_number="3.2.1.23"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2; beta-galactosidase-1-like protein 2"
                     /codon_start=1
                     /product="beta-galactosidase-1-like protein 2 isoform 2
                     precursor"
                     /protein_id="NP_001297697.1"
                     /db_xref="CCDS:CCDS80971.1"
                     /db_xref="GeneID:244757"
                     /db_xref="MGI:MGI:2388283"
                     /translation="MPKWSLRRRPGRTLGLLLLLVLSFLVLRRLNWSTLVPLWLQHQR
                     LGLRTKGPDFILEDSIFQILGGSIHYFRVPREYWRDRLLKLKACGLNTLTTYVPWNLH
                     EPERGKFDFSGNLDLEAFIQLAAKIGLWVILRPGPYICSEIDLGGLPSWLLQDPDMKL
                     RTTYHGFTKAVDLYFDHLMSRVVPLQYKHGGPIIAVQVENEYGSYNKDRAYMPYIKKA
                     LEDRGIIEMLLTSDNKDGLEKGVVDGVLATINLQSQQELMALNTVLLSIQGIQPKMVM
                     EYWTGWFDSWGGSHNILDSSEVLQTVSAIIKDGSSINLYMFHGGTNFGFINGAMHFND
                     YKADVTSYDYDAILTEAGDYTAKYTKLRELFGTVSGIPPPPPPELTAKMVYEPMSPAL
                     YLSLWDAIQYMDKPVTSETPINMENLPVNNGNGQAFGYVLYETTIFSSGVLSGLVRDR
                     GQVFLNRVSIGFLDYKTTKITIPLTQGYTILRILVENRGRVNYGNNIDSQRKGLIGNL
                     YLNNKALKNFKIYSLDMTKQFLQRFDMDNWSVIPKELTFPAFFLGALSVGIYPSDTFL
                     KLEGWVKGVVFVNGHNLGRYWNVGPQETLYLPGVWLDKGINKVIIFEETMSGSMVQST
                     DIPHLGRNQYIN"
     exon            172..369
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            370..438
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            439..534
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            535..643
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            644..736
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            737..818
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            819..889
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            890..974
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1112
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1193
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1194..1300
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1441
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1442..1513
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1514..1592
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1593..1680
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1681..1792
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1793..1909
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1910..3689
                     /gene="Glb1l2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3669..3674
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Glb1l2"
                     /note="hexamer: AATAAA"
     polyA_site      3689
                     /gene="Glb1l2"
                     /note="major polyA site"
ORIGIN      
        1 ccccgcccct ccgggccaag gctttggcgc gcctctgagt gttgctggag tgggaacccg
       61 ggtgtctacc agcagcgttt gcaagatgcc caagtggagt ctgcggcgga ggccaggccg
      121 cacactcgga ctcctgctgc tgctggtctt gagcttcctg gtgctccgca ggttgaactg
      181 gagcactctg gttcccctat ggctccaaca tcagcgcctg ggacttcgaa caaaaggccc
      241 agacttcatt ctggaggact ccatctttca gattctgggg ggatccatac actatttccg
      301 tgtacccagg gaatactgga gggaccgcct gctcaaattg aaagcctgtg gcttgaatac
      361 ccttaccacc tatgtgccat ggaacctcca tgagccagaa agaggcaaat tcgacttctc
      421 cgggaacctg gacctagagg cctttatcca gctggctgca aagatcgggc tgtgggtgat
      481 tctgcgacca gggccctaca tctgtagtga gattgacctc gggggcttgc ccagctggct
      541 cctccaagac cctgacatga agctgaggac aacctaccac ggcttcacta aggcagtgga
      601 tctttacttt gaccacctga tgtccagggt ggtgccactt cagtataagc atggaggacc
      661 tatcatcgcc gtgcaagtgg agaatgaata cggttcctat aacaaagacc gtgcatacat
      721 gccttacatc aagaaggctt tggaagacag aggcatcatt gagatgctcc tgacctcgga
      781 caacaaagat ggcctggaaa agggagtcgt tgatggagtg ctggccacca tcaacttaca
      841 gtcgcaacag gagctgatgg cactaaacac tgttctctta tctatacagg ggattcaacc
      901 caagatggtg atggagtact ggacagggtg gtttgactcg tggggtggct cccacaatat
      961 cttggattcc tctgaagtcc tgcaaacagt gtctgccatc atcaaagacg gctcctccat
     1021 caacctgtac atgttccatg gaggcacaaa ttttggcttc ataaatggag ccatgcattt
     1081 taatgactac aaggctgatg ttaccagcta tgactatgat gctatactga cagaggctgg
     1141 agactacact gccaaataca ccaagcttcg agaactcttt ggaactgtct caggtattcc
     1201 tccacctcct ccacctgagc ttactgctaa gatggtctat gagccaatga gtccagctct
     1261 ctacctatca ctgtgggatg ctatccagta catggataag ccagtcacat ctgagacacc
     1321 catcaacatg gagaacctgc cagtaaacaa tggtaatggg caggcctttg ggtatgttct
     1381 gtatgagacc actatctttt catctggtgt cctcagtggc ctcgtgcgtg acagaggaca
     1441 ggtctttttg aatagagtat ccataggatt cctggactat aaaacaacaa agatcactat
     1501 ccccttgacc cagggttaca ccatactgag gatcttggtg gagaatcgtg ggcgagtcaa
     1561 ctatggaaat aacattgaca gtcagcgcaa aggtttaatt ggaaatctct atctgaataa
     1621 taaagctctg aaaaacttca aaatctacag cctggatatg acaaagcagt tccttcagag
     1681 gttcgacatg gacaactgga gtgtcatacc caaagaactg acctttcctg ctttcttcct
     1741 gggtgccttg tcagttggca tttacccttc tgacacattt ctgaagttgg agggctgggt
     1801 gaagggggtt gtattcgtta atgggcacaa ccttggacgc tactggaatg taggacctca
     1861 ggagactctc tacctcccag gtgtctggct ggacaaagga atcaacaagg ttatcatttt
     1921 tgaagagaca atgtcaggct ccatggtcca gtctactgat atcccccacc tgggcaggaa
     1981 ccagtacatt aactgaacag aagtcccagc agcccctgct gtggttggca gcttccttcc
     2041 tctcctgcag gagaattcat aactagcaac ctcagggaat gaagggctat agtcaactta
     2101 gactataaaa atcctaagcc tgagaggact gaagagaaga tggggtagcg ctctctggga
     2161 tacactcaca gtgagatgtc ttctcttctg gttttgtgga tgggcacttt ctgttcctct
     2221 gatctttcag gggaagccgt agggccatct ctgagggtgg agtatgtagt tatatcacct
     2281 tcgaagaagg tgctgggcct gggtgggtac tgccctcttc tggaagtgaa agcctcgctg
     2341 accagcttgc tggttctagg taggcttttt gaacattccc agcagggcat agcaacatct
     2401 tagacagtct ctttgtgctc ctgaacttgt gcgtttgtca ttgtttgtag agcaaagaga
     2461 aaaggggatc taacacgagt caactttatt tgttgacttt gcacctgact ttgttctgcg
     2521 aatctggaag aaacatgtct tttccttttc aggctgtctc ttcttacatg aatcagttgg
     2581 taaacagagc ctaagagaaa aaggcgtgtt cagtacttat ctcccatgtt aagaggttgg
     2641 catttcagca gaaaccacct cacacccatg ctctcaggaa gagaatggca gaaggcccag
     2701 ctaggtagta ctgggcagct gcaccccact gcagttggat ctggcgttag ctacagccca
     2761 caggtctagc actgtcttgt ttctagctca gtgattcttt gaatactctc cttccccttc
     2821 ctgaccaaac cgcagggcag aggaaaggca gcagggtgga ggaaaggcca cgctgtctta
     2881 gtccagactg aaggttcttg ttcaagggat caagtgcaat ggtttggctt gggcttgtca
     2941 ttctaaattg caatacattt gaagcaaacc ttctttgtgg atgtctcaag cttgtctgcg
     3001 ccactctcag ccatgggagg tgacccttaa ggatctagat actgatggta cccagctggc
     3061 aagtggcaca gaccactggc ttcttaccac ttttcctgat ttcaattctc cttggcatgt
     3121 cattgcattc agagcagtcc aatctcatgc tggtagttaa gaataagaac tttctagaaa
     3181 gcgaaaccag aacatatcat tgagctatag aagatagttt tgcttcataa attacagctg
     3241 aaatgtactg ctccaagtaa tagtgcccac acagaagccc agtgaagatg ggctaggcaa
     3301 gaacaggcca acggagaggc ttacagactg acagggtggc tccctgagta aggccaagac
     3361 tactgtagtc agggctacta cagccactga gctaagcgcc cagctaactt acttgtgagt
     3421 ggtcataggg gcacaaccca tgtcccactg ggtctgagaa attgaggttg tgtctgtctg
     3481 tctgtctgtc tgtctgtctt tttctcgatg tctctaagat ggggtcatat tataataatc
     3541 cagtctggcc ttgatcttct ggttctcttg ccttagcttc ccaacttctg agattacagg
     3601 cttgtagcat catgcccaac tcaaaggaac cttttttaaa aagcctttta tttgtcttaa
     3661 aaatttaaaa taaaatcact tgataattaa aaaaaaaa
//
