LOCUS       NM_001346750            1560 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus glycoprotein integral membrane 1 (Ginm1), transcript
            variant 2, mRNA.
ACCESSION   NM_001346750 XM_006512656
VERSION     NM_001346750.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC159137.8, AK144481.1, CK335066.1 and AC156391.6.
            
            On Oct 27, 2016 this sequence version replaced XM_006512656.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK144481.1, SRR7345562.772337.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-40                AC159137.8         71703-71742
            41-700              AK144481.1         2-661
            701-1001            CK335066.1         254-554
            1002-1560           AC156391.6         7885-8443
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 2.35 cM"
     gene            1..1560
                     /gene="Ginm1"
                     /note="glycoprotein integral membrane 1"
                     /db_xref="GeneID:215751"
                     /db_xref="MGI:MGI:2384905"
     exon            1..157
                     /gene="Ginm1"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..1030
                     /gene="Ginm1"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2; glycoprotein integral membrane protein 1"
                     /codon_start=1
                     /product="glycoprotein integral membrane protein 1 isoform
                     2 precursor"
                     /protein_id="NP_001333679.1"
                     /db_xref="CCDS:CCDS83678.1"
                     /db_xref="GeneID:215751"
                     /db_xref="MGI:MGI:2384905"
                     /translation="MEGGLSAPLSVRLLLFIALPAAGWLTTNAPRPPSTAPQNGIQIN
                     VTTLSKSGEESEEQVVLNITYERGQVYVNDLPVNSGVTRISCQTLIVKSENLEKLEEK
                     HYFGIVTVRILVLERPVTYSASSQLIVIQGEVVEIDGRQAQQKNVTEIDILVKNQRVL
                     RYSSYFLPLEESMLYSISQDSDILFTLPDFSKKVGTVSSLQTTSHYLMGNVETTVDGN
                     ALPGKLPETPLRAEPPSSYKVMCQWMEKLRKALCRFWSSVVPVLFMFLDVMVVGVLGA
                     AGVIAVLKLLFPVCENKGILQVDKMNGISVPIILYPDGSEKTAQKLTDKTDI"
     exon            158..217
                     /gene="Ginm1"
                     /inference="alignment:Splign:2.1.0"
     exon            218..314
                     /gene="Ginm1"
                     /inference="alignment:Splign:2.1.0"
     exon            315..466
                     /gene="Ginm1"
                     /inference="alignment:Splign:2.1.0"
     exon            467..623
                     /gene="Ginm1"
                     /inference="alignment:Splign:2.1.0"
     exon            624..757
                     /gene="Ginm1"
                     /inference="alignment:Splign:2.1.0"
     exon            758..921
                     /gene="Ginm1"
                     /inference="alignment:Splign:2.1.0"
     exon            922..1560
                     /gene="Ginm1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1539..1544
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ginm1"
                     /note="hexamer: AATAAA"
     polyA_site      1560
                     /gene="Ginm1"
                     /note="major polyA site"
ORIGIN      
        1 ccacgccctc acctcccgcc gcgccgggcc ggtgttgtcc aagatggagg gcggcctgtc
       61 ggcgccgctg tccgtccggt tgttgctgtt catagcgctg ccagccgcgg gatggctgac
      121 caccaacgcg cccaggccgc cgtccacagc cccgcagaat ggcatccaaa tcaatgtaac
      181 taccctgagc aagagtgggg aagagtctga agaacaggtt gttcttaaca taacctatga
      241 gcgtggacag gtatatgtaa atgacttacc tgtaaatagt ggtgtaaccc gaataagctg
      301 tcagactttg atagtgaaga gtgaaaatct ggaaaaattg gaggagaaac actattttgg
      361 aattgtcact gtgaggatct tagttctcga gaggcctgtg acgtacagtg ccagctccca
      421 gctgattgtc atccaaggag aggttgtgga gattgacggg agacaagctc aacaaaagaa
      481 tgttactgaa attgacattt tagttaagaa ccagagagta ctcagatatt caagctattt
      541 ccttcctttg gaagaaagca tgctttattc tatttctcaa gacagtgaca ttttattcac
      601 gcttcctgac ttttccaaaa aagtaggaac tgttagctca ctgcagacca ccagccacta
      661 cctcatgggg aatgtggaaa ccactgtgga tggaaatgct ttacctggca agttgcctga
      721 gactcctctt agagcagagc ctccatcttc atacaaggta atgtgccagt ggatggagaa
      781 gctgagaaaa gcgctctgta ggttctggag cagtgtggtc cctgtgctct tcatgtttct
      841 ggacgtcatg gtggttggag ttctgggagc agcaggagtc atagcagtgt taaagctgct
      901 cttcccagtg tgtgagaaca aaggaattct tcaggtggat aaaatgaatg ggatctcggt
      961 acctatcatc ttatacccag acggctctga gaaaacagca caaaaactta cagataaaac
     1021 agatatttaa agcaccatct ccaatcatgg actctattgc ccccagactt gccatttgaa
     1081 taccatttta tttaaatcat tcaacttaaa caaagaaatt gccaaattcc caagaccttt
     1141 acagttggcc ctttcagtgt gaggctccgt gcacaggctg gctgttcaga agatgaatca
     1201 ctaaggaaag tttaaatgga aagatgactg agaaataacc agactgaaag ggaagcaaga
     1261 caaagccaag tgccaagacc tcccaggtgc ctttgctgca gaaactgtat ctatttgatt
     1321 actattgtaa gattttataa gaagcacttt atgaaattct aatttaaaag ctggagaact
     1381 taacatttat tttttttttt actcagtaca atgtgccttt atatcacata catgacacag
     1441 tataaaaatc actgaagtgt atcatgattt gtatctgtac caaaacccct taccttgaat
     1501 gcaccaggat ttataatagt gacatggtct cactgtaaaa taaacttttt taaaaaagaa
//
