LOCUS       NM_001372140            3870 bp    mRNA    linear   ROD 04-AUG-2024
DEFINITION  Mus musculus GIMAP family P-loop NTPase domain containing 1
            (Gimd1), transcript variant 1, mRNA.
ACCESSION   NM_001372140 XM_006501649
VERSION     NM_001372140.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3870)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122851.4.
            
            On Aug 21, 2019 this sequence version replaced XM_006501649.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189682.113711.1,
                                           SRR5189685.120615.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849377, SAMN00849378
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-63                AC122851.4         180102-180164
            64-458              AC122851.4         184979-185373
            459-3870            AC122851.4         194627-198038
FEATURES             Location/Qualifiers
     source          1..3870
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 61.47 cM"
     gene            1..3870
                     /gene="Gimd1"
                     /gene_synonym="EG433653; Gm5549"
                     /note="GIMAP family P-loop NTPase domain containing 1"
                     /db_xref="GeneID:433653"
                     /db_xref="MGI:MGI:3647547"
     exon            1..63
                     /gene="Gimd1"
                     /gene_synonym="EG433653; Gm5549"
                     /inference="alignment:Splign:2.1.0"
     exon            64..458
                     /gene="Gimd1"
                     /gene_synonym="EG433653; Gm5549"
                     /inference="alignment:Splign:2.1.0"
     CDS             66..719
                     /gene="Gimd1"
                     /gene_synonym="EG433653; Gm5549"
                     /note="GIMAP family P-loop NTPase domain-containing
                     protein 1"
                     /codon_start=1
                     /product="GTPase IMAP family member GIMD1"
                     /protein_id="NP_001359069.1"
                     /db_xref="CCDS:CCDS57257.1"
                     /db_xref="GeneID:433653"
                     /db_xref="MGI:MGI:3647547"
                     /translation="MTDTNKMIINLAVFGRTQSGKSSAGNVLLGSADFYSSFAPGSVT
                     KECSLGRSCHLHGFMRRGGQEISLQIQVLDTPGYPHSKLSTRCVKQEVKKALLHHFGQ
                     EGLHLALLVQRADVPFFGQEASNAVQLMQELLGDSCKNYMAVLFTHAEELEEAGLSEE
                     EYLREASDTLLTLLDSVQHRYIFLSGRGNLCNEQRIKILERIMEFIKENHFQVLSLA"
     exon            459..3870
                     /gene="Gimd1"
                     /gene_synonym="EG433653; Gm5549"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1415..1420
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gimd1"
                     /gene_synonym="EG433653; Gm5549"
                     /note="hexamer: AATAAA"
     polyA_site      1440
                     /gene="Gimd1"
                     /gene_synonym="EG433653; Gm5549"
                     /note="major polyA site"
     regulatory      3848..3853
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gimd1"
                     /gene_synonym="EG433653; Gm5549"
                     /note="hexamer: AATAAA"
     polyA_site      3870
                     /gene="Gimd1"
                     /gene_synonym="EG433653; Gm5549"
                     /note="major polyA site"
ORIGIN      
        1 aaagaataaa ctgtactggt tccaaggaaa cctgtaaaga atacatttct agcatcaaaa
       61 gagctatgac agacaccaac aagatgatca tcaacttggc tgtctttggc aggactcaga
      121 gtgggaaaag ctctgctggg aatgttcttt tgggaagtgc tgacttctac agtagctttg
      181 ctccaggctc cgtaaccaaa gagtgcagcc tgggccgcag ctgtcacctc catggcttca
      241 tgcgtcgagg gggacaagag atcagccttc agatacaggt actggacact ccagggtatc
      301 cacacagcaa gctgagcacg agatgtgtaa aacaggaagt gaagaaggcc ttgctgcatc
      361 attttggaca agagggtctc catcttgctc tgctggtcca gagagctgat gtgcctttct
      421 ttggacagga agcatctaac gcagtccaac tgatgcagga acttctggga gattcctgta
      481 agaattacat ggctgtcctt tttacccatg cagaagaact cgaagaggca gggttgagtg
      541 aagaggaata tttgcgtgag gcttctgaca cactgttaac cctgctcgat tccgttcagc
      601 acagatatat cttcctgtcc ggaagaggaa acttgtgcaa tgaacaaaga atcaaaatct
      661 tagaaagaat catggagttt ataaaagaaa atcattttca agttcttagt ttggcataaa
      721 atttaagtga ggagaagaga gctccaggta ttaatcaggg tcagaaatcc aattttataa
      781 cctgcctttc ttcacatgaa tatggggcat gagaattccc tgtatggcta ttgagccatt
      841 ttgggggaaa aaaagtagat aaaaactaat atgaaggata aaagctttcg tgatatcaga
      901 attatactca taagtattta tccaacagaa aagtgttcat ttgtgcaatt agaaacatgc
      961 atatacaaga atgctcacgg tggtaccatt catcagagtc aaagactgaa aactatctag
     1021 atgtttgtta atagaataat attcaaattg tggtatacta acccactgag atacacagtg
     1081 tgagggtgaa caagctcaat cagctgtcat agcagtgatc aaccatctaa gtacaacact
     1141 aagagaaaga agccagacat aaaactcgct caatgactcc atttgtagaa aggtcagcaa
     1201 cagtcaaaga ctaatgcaac ctaactactc tggtgtgaag aagtgctggg tatcagcaaa
     1261 gcaaaaggat gctgtggggt aacggcagag atgttcgtaa ggctagttcc tgatctggaa
     1321 gctggtttta ctggatgtgt accctgtgaa aatggaacaa aattccctgt aatgtatgag
     1381 ctcataactg tatctgtggg tataactgtg aaagaataaa cttaattcct ttttaagaga
     1441 tttatgtcac tgcttacttg atgcaagaaa agaaagattg tgtagccaag ctagagtttg
     1501 tgtcctcatg tacaccgtgt atacaatggg cacttaaata tgttctccat agttgctgca
     1561 atgattaaat ggatcgccat gagagagaga ctggatgtta gctttctttt ctgccttacc
     1621 tgctagcccc actttgattt gtaaatatta agaaaaactc agagcaaatc cttcagcaaa
     1681 cccctataat agttctcgga gcaggctatt actgcagtct ggactacaaa gtggtgactc
     1741 ttgtgtgttt gcattgctat aagtacctga atgatttggc cacttgagag agctcttcag
     1801 ggtggtttta atgagatggt gataatgaaa agaaagcaat tgtagttatc aagagccatg
     1861 tccatcatca caaaggcaga atcatatccc tttcacatgt gattaaatgt gaatcttccc
     1921 agacagcagc taattcatca accattttca taaagttaat ttgtggttta ttttacttca
     1981 ttttgcttac tgtgaatagc ctgtagtcat ttccattaga agtgggatta taactaacga
     2041 gtttcttcca aaagcagttc tcaaagagct agtattatct gaaccacaga taacatttat
     2101 cagtcatcaa cttcctgttt gttaggtaga cagcttcgga tggacagtga cagacttagc
     2161 cttatttctc tcccattatt ttattatatt gctgtcaaca ccagacagac ttaattacaa
     2221 tggatgctta attgatacat agtatttgta catctctata gtgtattgtg gtaattcact
     2281 gcttattata taatatgtaa tgatcaaatc aggataatat gcatttgact tcttatatga
     2341 atcatcattt ttaaatgttg ggaattttgt acttctctag tcacttttaa agacatcata
     2401 gacaagctaa ggatgcacaa ggccttaggt tcaacctggt caaggcaaca ccaaagcaac
     2461 aaaggatgaa caggtgtagg gaaatgtgaa gttaaactgg taggtatacg tttcatattt
     2521 gtatgataca gagcaatttt aatagagaac aaaatatgtg tcatcagtta caatagttat
     2581 atactgagca gggtgagaag caccagagat ctcgccaact ccatgattcc cacgctcctt
     2641 catatccaga agttcaagtt ttccatgtta gcttgctttt ctccctttct ttctttcttt
     2701 ctttctttct ttctttcttt ctttctttct ttctttcttt ctttctttct ttctttcttt
     2761 cttcctttct ttctttcttt tctttagatt tcctgatatt atcaggttga tttttctaac
     2821 actttccaat gtttattttg tagtttgggt ataaacatgt tttctgccaa ataatattgt
     2881 tactgaattg tctcctttgt tgaagaacat gggtgcttct cctcatttgg gcttatttgt
     2941 tttatgtgcc tgttatttct tgcatttttc tgccatttct tctaattttc ctagtttgag
     3001 aatgttgcta tttatcttgt ttattctctt taactgtttg gaagttttgc tggaattcat
     3061 actcagaaca ggaatcctgt atgttctcta ttattgcttg ataacaaagt tacaactgtt
     3121 tattcaacca agaaacgttt cactgataag cccttcaatt gtgggtgtta aggcatgcag
     3181 aataccttca tctcttcctt cttcttttct gcttctatca tcctccccat agaaaagttt
     3241 ttaggaatgt ttcttttctt catataactg ggttctgcaa gaccattaac ccaagacttc
     3301 cttttatggg ctgtcctgtt tgtttcaaga gccattttat gctacttaag ccaaacaccc
     3361 gtcatagttt aaattattta tcagcattca caatttcatt atgcactttc aaatgaatct
     3421 tgttttcagc tttgattcct gccttttgct ctccatccct gacttctcag tactagaaac
     3481 tttcatcttt accactattt cctcttgtct tcatcttcct caatgtctct agtgaatgtt
     3541 tcccctcata tgctctgcat tcttgcatag tcactattaa attccaagca tatccttgaa
     3601 cacactacta cacaatagca gtattgggtc ttcatgataa tcagtgtaat gaaggaagga
     3661 aatactgtgt ctgttgggaa tgggagttga ctcttacgaa tcactgaagt gaactcttgt
     3721 tattgtgctt gagttgtgca cctctttctg gatgacagta catatattta tccacagtct
     3781 taaccatttt tttggagaaa actgcaactc tcaagatacc catgtgcgca ggattagctc
     3841 ttggcaaaat aaatggcatt ctggtagcta
//
