LOCUS       NM_026269               2106 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus golgi to ER traffic protein 4 (Get4), transcript
            variant 1, mRNA.
ACCESSION   NM_026269
VERSION     NM_026269.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2106)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2106)
  AUTHORS   Mock,J.Y., Chartron,J.W., Zaslaver,M., Xu,Y., Ye,Y. and
            Clemons,W.M. Jr.
  TITLE     Bag6 complex contains a minimal tail-anchor-targeting module and a
            mock BAG domain
  JOURNAL   Proc Natl Acad Sci U S A 112 (1), 106-111 (2015)
   PUBMED   25535373
REFERENCE   3  (bases 1 to 2106)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ053487.1 and AK003551.1.
            
            On Jul 18, 2009 this sequence version replaced NM_026269.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK003551.1, SRR1660821.133205.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                CJ053487.1         2-52
            52-2106             AK003551.1         1-2055
FEATURES             Location/Qualifiers
     source          1..2106
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 78.23 cM"
     gene            1..2106
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /note="golgi to ER traffic protein 4"
                     /db_xref="GeneID:67604"
                     /db_xref="MGI:MGI:1914854"
     exon            1..296
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /inference="alignment:Splign:2.1.0"
     CDS             142..1125
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="Golgi to ER traffic protein 4 homolog isoform 1"
                     /protein_id="NP_080545.2"
                     /db_xref="CCDS:CCDS19805.1"
                     /db_xref="GeneID:67604"
                     /db_xref="MGI:MGI:1914854"
                     /translation="MAAAAAMAEQEGARNGARNRGGVQRVEGKLRASVEKGDYYEAHQ
                     MYRTLFFRYMSQSKHAEARELMYSGALLFFSHGQQNSAADLSMLVLESLEKAEVDVAD
                     ELLENLAKVFSLMDPNSPERVAFVSRALKWSSGGSGKLGHPRLHQLLALTLWKEQNYC
                     ESRYHFLHSSDGEGCANMLVEYSTARGFRSEVDMFVAQAVLQFLCLKNKNSALVVFTT
                     YTQKHPSIEDGPPFVQPLLNFIWFLLLAVDGGKLAVFTVLCEQYQPSLRRDPMYNEYL
                     DRIGQLFFGVPPKQTSSYGGLLGNLLSSLMGSSEQEEGEESQDDSSPIELD"
     exon            297..375
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /inference="alignment:Splign:2.1.0"
     exon            376..457
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /inference="alignment:Splign:2.1.0"
     exon            458..607
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /inference="alignment:Splign:2.1.0"
     exon            608..746
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /inference="alignment:Splign:2.1.0"
     exon            747..887
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /inference="alignment:Splign:2.1.0"
     exon            888..963
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1036
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /inference="alignment:Splign:2.1.0"
     exon            1037..2106
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1350..1355
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /note="hexamer: AATAAA"
     polyA_site      1385
                     /gene="Get4"
                     /gene_synonym="1110007L15Rik; Cee"
                     /note="major polyA site"
ORIGIN      
        1 acgtgcggcc cgcggcgcgc ccgccctcgc acggctcctc gcggccaccg tagaaggagt
       61 gcggcggccg cagggacgga agccgggagg cgccgccgac cgcgcctgcg acagcgtcag
      121 ctctgcgcgg aacgccggcc catggcggcg gcggcggcga tggcagagca ggagggcgcc
      181 cgcaacggcg cccgcaaccg cggcggcgtc cagcgcgtgg agggcaagct gcgtgctagc
      241 gtcgagaagg gcgactacta cgaggcgcac cagatgtacc ggaccctctt cttcagatac
      301 atgtctcaga gcaaacatgc agaggcccgg gagcttatgt actcaggagc attgctcttc
      361 ttcagtcatg gccagcagaa cagtgcagct gacctgtcca tgctggtcct cgaatccctg
      421 gaaaaggccg aggtggacgt agctgatgag cttttggaaa atctggctaa agtgttcagt
      481 ttgatggatc caaattctcc tgaacgagta gcttttgtgt ccagagccct gaagtggtcc
      541 agtggagggt ctgggaaact gggccatcct cgactccacc agctgctggc cctcacatta
      601 tggaaagagc aaaattactg tgagtctcgg tatcactttc tgcactccag tgatggcgag
      661 ggctgcgcca acatgctggt cgagtactct actgcccgag gcttccgaag tgaggtggac
      721 atgttcgtgg ctcaggctgt gctacagttt ctctgtttga aaaataagaa cagtgcactg
      781 gtggtcttta caacgtacac acagaagcat ccatccatcg aggatgggcc gccctttgtt
      841 cagcccctgc tcaatttcat ctggtttctg ctgctggccg tggacggtgg caagctggct
      901 gtcttcacgg tgctgtgcga gcagtaccag ccgtccctgc ggagggaccc catgtacaac
      961 gagtacctcg acaggatcgg acaactcttc ttcggtgtgc cgccaaagca gacatcctcc
     1021 tatggaggct tgctagggaa cctgctgagc agcctcatgg gctcctcaga gcaggaagag
     1081 ggggaagaga gccaggatga cagcagcccc atcgagctgg actgaagctg cctggccagc
     1141 gtggagatgt ccatggccgg caccgctggg acggattcag tgccaggctg ggcgcaaggc
     1201 cccttaccag tgggctgctg ctctgtggct gaggggccat ctatgcagag tctgtcccta
     1261 tttatgtatg gtggttgagg gctgtgtggc caggaccaag agcaaggccc agcttctgct
     1321 ggccaatcgt gttccttcag atcacccaca ataaagcgca gcccttgctg cagcacccgc
     1381 tgccatcctt gtctctgctt ccttggggag ggctgcaggg tggcacagca gcctggcgtc
     1441 agtgactggt accccttctc ctgtgtccag tgcagccatg gcatgccaga gaagtggcag
     1501 ctgccgctgt gagccacgca ggatcccgtg tcctgcagac gagagcggct ttcttgtttg
     1561 tgggattttg tttggacaca gagttgtttt gcaatcatgg tgtgcttccc agggacagag
     1621 cgtgtgctgt ggcggctagg ctccttggag gtcacaagca gctggccagg gtaatgtccc
     1681 ttggtccatg gggctgtggc ccgtgctgta gtctatgggc tcctccgttc aagctgcagc
     1741 cctgctggtc ccttcagctc cacgctgctg ctctggcgag gttttaaagg gtgccatggg
     1801 ctctcacgtc cttcgtgttg cagtatttat ttttactggg tgaggatttt tcaacttaac
     1861 gttttaggac ttaaccaaat aaccagtcca tgaataagca accccattac cacagacagt
     1921 acccacgcta ccagtctgat tataaaggga gacactttat tttttcacaa ttaaataaga
     1981 attgtagatt aatacacctc tatcttgcat gggaaggagg gaaatatgcg ttatttactg
     2041 taaaaaaatg gaatttaaag gaaggcttgt gtcacctttt gactataaat aaatcctttc
     2101 tactgg
//
