LOCUS       NM_025638               2484 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus glycerophosphodiester phosphodiesterase domain
            containing 1 (Gdpd1), mRNA.
ACCESSION   NM_025638
VERSION     NM_025638.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2484)
  AUTHORS   Tserendavga,B., Ohshima,N., Fujita,C., Yuzawa,K., Ohshima,M.,
            Yanaka,N., Minamishima,Y.A. and Izumi,T.
  TITLE     Characterization of recombinant murine GDE4 and GDE7, enzymes
            producing lysophosphatidic acid and/or cyclic phosphatidic acid
  JOURNAL   J Biochem 170 (6), 713-727 (2022)
   PUBMED   34523685
  REMARK    GeneRIF: Characterization of recombinant murine GDE4 and GDE7,
            enzymes producing lysophosphatidic acid and/or cyclic phosphatidic
            acid.
            Erratum:[J Biochem. 2022 Mar 31;171(4):467. doi:
            10.1093/jb/mvab152.. PMID: 35137094]
REFERENCE   2  (bases 1 to 2484)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2484)
  AUTHORS   Fujihara,Y., Noda,T., Kobayashi,K., Oji,A., Kobayashi,S.,
            Matsumura,T., Larasati,T., Oura,S., Kojima-Kita,K., Yu,Z.,
            Matzuk,M.M. and Ikawa,M.
  TITLE     Identification of multiple male reproductive tract-specific
            proteins that regulate sperm migration through the oviduct in mice
  JOURNAL   Proc Natl Acad Sci U S A 116 (37), 18498-18506 (2019)
   PUBMED   31455729
REFERENCE   4  (bases 1 to 2484)
  AUTHORS   Rahman,I.A., Tsuboi,K., Hussain,Z., Yamashita,R., Okamoto,Y.,
            Uyama,T., Yamazaki,N., Tanaka,T., Tokumura,A. and Ueda,N.
  TITLE     Calcium-dependent generation of N-acylethanolamines and
            lysophosphatidic acids by glycerophosphodiesterase GDE7
  JOURNAL   Biochim Biophys Acta 1861 (12 Pt A), 1881-1892 (2016)
   PUBMED   27637550
REFERENCE   5  (bases 1 to 2484)
  AUTHORS   Tsuboi,K., Okamoto,Y., Rahman,I.A., Uyama,T., Inoue,T., Tokumura,A.
            and Ueda,N.
  TITLE     Glycerophosphodiesterase GDE4 as a novel lysophospholipase D: a
            possible involvement in bioactive N-acylethanolamine biosynthesis
  JOURNAL   Biochim Biophys Acta 1851 (5), 537-548 (2015)
   PUBMED   25596343
  REMARK    GeneRIF: GDE4 may act as lysophospholipase D, which is involved in
            the generation of N-acylethanolamines and lysophhosphatidic acid.
REFERENCE   6  (bases 1 to 2484)
  AUTHORS   Ohshima,N., Kudo,T., Yamashita,Y., Mariggio,S., Araki,M., Honda,A.,
            Nagano,T., Isaji,C., Kato,N., Corda,D., Izumi,T. and Yanaka,N.
  TITLE     New members of the mammalian glycerophosphodiester
            phosphodiesterase family: GDE4 and GDE7 produce lysophosphatidic
            acid by lysophospholipase D activity
  JOURNAL   J Biol Chem 290 (7), 4260-4271 (2015)
   PUBMED   25528375
REFERENCE   7  (bases 1 to 2484)
  AUTHORS   Harrow,J.L., Steward,C.A., Frankish,A., Gilbert,J.G.,
            Gonzalez,J.M., Loveland,J.E., Mudge,J., Sheppard,D., Thomas,M.,
            Trevanion,S. and Wilming,L.G.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY282485.1, AK013864.1, AK039183.1, CA451251.1 and BY697784.1.
            
            On Jul 18, 2009 this sequence version replaced NM_025638.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK167812.1, SRR1660811.254118.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                BY282485.1         2-86
            86-1101             AK013864.1         12-1027
            1102-1752           AK039183.1         84-734
            1753-2332           CA451251.1         58-637
            2333-2484           BY697784.1         248-399
FEATURES             Location/Qualifiers
     source          1..2484
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 51.87 cM"
     gene            1..2484
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /note="glycerophosphodiester phosphodiesterase domain
                     containing 1"
                     /db_xref="GeneID:66569"
                     /db_xref="MGI:MGI:1913819"
     exon            1..302
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..1105
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /EC_number="3.1.4.39"
                     /note="glycerophosphodiester phosphodiesterase
                     domain-containing protein 1; glycerophosphodiester
                     phosphodiesterase 4"
                     /codon_start=1
                     /product="lysophospholipase D GDPD1"
                     /protein_id="NP_079914.1"
                     /db_xref="CCDS:CCDS25206.1"
                     /db_xref="GeneID:66569"
                     /db_xref="MGI:MGI:1913819"
                     /translation="MSSTAAFCLLSTLGGYLVTSFLLLKYPALLHQRKKQRFLSRHIS
                     HRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVS
                     DLKYCELPPYLCKLDVPFQRACKCEGKDTRIPLLKEVFEAFPETPINIDIKVNNNVLI
                     KKVSELVKQYKREHLTVWGNANSEIVDKCYKENSDIPILFSLQRVLLILGLFFTGLLP
                     FVPIREQFFEIPMPSIILKLKEPHTISKGHKFLIWLSDTLLMRKALFDHLTARGIQVY
                     VWVLNEEYEYKRAFDLGATGVMTDYPTKLKDFLNNFSA"
     exon            303..345
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            346..481
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            482..527
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            528..646
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            647..736
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            737..870
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            871..930
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            931..982
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            983..2484
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2384..2389
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2390
                     /gene="Gdpd1"
                     /gene_synonym="2610020H15Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggggtcgggc tgcgcctgcg tgctgagtcc gcacgaacaa gtgcgctacg ccgagggcac
       61 cggctgaggg cgagcagacc tcgagcagct gccggcgctg cggccgttgc taccatcaca
      121 gcacagtcgg ggtctcaggc ccagaaggcg gtgaccgagg atgtcgtcca ccgcggcttt
      181 ttgccttctc tctactctgg ggggatattt ggtcacctcg ttcttgttgc ttaaataccc
      241 agcgttgctg caccagagaa agaaacagcg attcctcagt aggcacatct ctcaccgcgg
      301 aggtgctgga gaaaaccttg agaacacaat ggctgccttc cagcacgcag ttaccattgg
      361 gacagacatg ttagaactgg actgccatat cacaaaagat gagcaagttg tagtgtcaca
      421 tgatgcaaac ctgaagaggt caactggggt caatgtaaac gtctctgatc tcaaatattg
      481 tgagctccca ccttaccttt gcaagctgga tgtcccattt cagagagcct gcaagtgtga
      541 ggggaaagat acccggatcc ccttgctgaa ggaagtgttt gaggccttcc ctgagacccc
      601 cattaacatc gacatcaaag tgaacaacaa tgtgctgatc aagaaggtct cagaactggt
      661 gaagcagtat aagcgagaac atctgacagt gtggggcaat gccaactctg agattgtaga
      721 caagtgttac aaagagaact cagacattcc tatactcttc agcctgcagc gtgttctgct
      781 catcctgggc ttgttcttca ccggcctctt gcccttcgtg cccattcgag aacagttctt
      841 tgaaatccca atgccctcca tcatactgaa gctaaaagaa ccacacacta tatccaaagg
      901 tcataagttt ctcatctggc tttctgatac cttattgatg cggaaagctc tatttgacca
      961 cctcaccgcc cggggcattc aagtgtacgt ttgggtttta aatgaggaat acgagtacaa
     1021 aagagccttt gatttgggag caactggagt gatgacggac tacccaacca agcttaagga
     1081 tttcttaaac aatttttcag cataaaaaaa aaaaagtaac tccgaatcat tcaaaggagt
     1141 catgaccaga atagatctga gggaaggtgt gttaaccatg gttcccctgg gatttccagg
     1201 atgataaaag gtttaatcag ttaagtttta atacctcatt ttttaagtct gtacgggaat
     1261 gtaggaacgt ccctgtcttg tgtatttatt ttcaccaata tttgcatatt ttacattggt
     1321 aacttgtttg aaggtaactg gcaactgaaa tgtagatcat tgatcaagat gtctgcatat
     1381 gatgcagctt tctactattg taaatctgaa atcaaagact ggaggcaaac tatgtgttag
     1441 ccttcactga gacaggatca accataggaa agaagattcc tgagccgggc atggtgacat
     1501 gagcctgcag tgccaccaca cggggtgggg agctaaggca agaggatcag ggggttgagg
     1561 ccagcttggg ctacatagtg aaaaaccctg tccttaattt tttttttata agaaagcaga
     1621 aaattattga aggccattac agccgttctg aattatctcg tatgtctagg tgcgtcttag
     1681 tttaggggaa attgagggga agaggaaccc gaaggtgcag ccaggcagtg tgtgctgttc
     1741 acagggggca aattcaagcc agtaacagtt tgttattact cagaaaccca atctgtgagc
     1801 tgagacagac tcctgggtta tggttgtcaa tggagacatt ccgattagag tctttttttt
     1861 ttttttcagg tgtgtgacaa tgctgtcatg cctaattttt tcttatgtct ttaaaaaaaa
     1921 aatagacatt ataaaataag atccaattag tcatgttttt atgtttcctt aaaaactact
     1981 cgattcttac ctttgggctt gactagactg atcctgggtc tgagttgtca gtgatgtggc
     2041 aaccctatag tgattggctg gtgacaacac tgttgcgggc gtgtttagca tgagccacat
     2101 gctcctgatc tctctcactt ctctgaagcg cagacccagc cagagttaac ccagcattat
     2161 acaccacttc tctgccttcc gatgtgactc catgcagacc tgtccctggc ctttgtgact
     2221 aatttaatga tgtcagattg ggagataaat tcagtataga gtactagacg tcttttgcct
     2281 aaattatgtc tctgctgtgg ggcctgccac gcacagctat ggagggcagc ctcatgctcc
     2341 cttctgttgc tttgtggtct aaattgtaat aaagttttcc aagaataaaa cgaggtattg
     2401 attttctttt atgcttgtga ttccagtgtg tttcatgtaa tttttttcag ttaatgaggt
     2461 aatttatcaa taaatgagtc aacc
//
