LOCUS       NM_001410111            6620 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ganglioside-induced differentiation-associated-protein
            2 (Gdap2), transcript variant 3, mRNA.
ACCESSION   NM_001410111 XM_006501001
VERSION     NM_001410111.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6620)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 6620)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   3  (bases 1 to 6620)
  AUTHORS   Liu,H., Nakagawa,T., Kanematsu,T., Uchida,T. and Tsuji,S.
  TITLE     Isolation of 10 differentially expressed cDNAs in differentiated
            Neuro2a cells induced through controlled expression of the GD3
            synthase gene
  JOURNAL   J Neurochem 72 (5), 1781-1790 (1999)
   PUBMED   10217254
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC102209.11 and AL606742.11.
            
            On Jul 27, 2022 this sequence version replaced XM_006501001.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422598.1658071.1,
                                           SRR17253011.7050335.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-139               AC102209.11        20038-20176         c
            140-285             AC102209.11        13618-13763         c
            286-525             AC102209.11        12528-12767         c
            526-665             AC102209.11        11666-11805         c
            666-819             AC102209.11        4707-4860           c
            820-908             AC102209.11        4381-4469           c
            909-934             AC102209.11        1-26                c
            935-985             AL606742.11        104158-104208
            986-1145            AL606742.11        108025-108184
            1146-1305           AL606742.11        109329-109488
            1306-1382           AL606742.11        112341-112417
            1383-1459           AL606742.11        113082-113158
            1460-1599           AL606742.11        115945-116084
            1600-1654           AL606742.11        117998-118052
            1655-1798           AL606742.11        123429-123572
            1799-6620           AL606742.11        127227-132048
FEATURES             Location/Qualifiers
     source          1..6620
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 43.49 cM"
     gene            1..6620
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /note="ganglioside-induced
                     differentiation-associated-protein 2"
                     /db_xref="GeneID:14547"
                     /db_xref="MGI:MGI:1338001"
     exon            1..139
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            140..285
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            286..525
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            526..665
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            666..819
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            820..908
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            909..985
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            986..1145
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            1146..1305
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            1306..1382
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            1383..1459
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            1460..1599
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            1600..1654
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            1655..1798
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     exon            1799..6620
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2645..2650
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /note="hexamer: AGTAAA"
     polyA_site      2682
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /note="major polyA site"
     regulatory      2991..2996
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /note="hexamer: AATAAA"
     polyA_site      3010
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
     regulatory      4025..4030
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /note="hexamer: AATGAA"
     polyA_site      4052
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
     regulatory      4836..4841
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /note="hexamer: AATAAA"
     polyA_site      4877
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
     regulatory      6595..6600
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /note="hexamer: AATAAT"
     regulatory      6598..6603
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
                     /note="hexamer: AATAAA"
     polyA_site      6613
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
     polyA_site      6620
                     /gene="Gdap2"
                     /gene_synonym="D3Ertd801e"
ORIGIN      
        1 agtcaccctg gcctctggag accggttcgc ttcagcctcc gcctctggca agcaaagtgt
       61 acggatgtca tccgcctgaa ttctgccacg gatctgagtg agctgcgggc cgccgcccgg
      121 atgggcccgc ccgagcgcta tacatgagct cccaaaggta gacatgccct gctcccagag
      181 tccccaggac ttggaatagt acctaactca cacttagtgc gaacaaatgt taagaggata
      241 aatgaggctg cagtttactg caggaaacag ctgtgggagt cagggctcaa atctccaggg
      301 attgttgaat tgccaaagag tttggttcac gagctgaagc tcccattcca tggatccctt
      361 gggtgcacct tcccagtttg tggatgtgga taccctgcta agctggggcg actcgtacga
      421 agatgaagta gactgcgctg acagtactgc cgaggccttc caggaagacg ccagcagatc
      481 accttttgtt tatagtcggg acgtcaatgg aaaagtggtt ctttggaaag gagatgtggc
      541 attactgaac tgcacagcca ttgtgaatac cagcaatgaa agcctcacag ataagaaccc
      601 tgtgtcagag agcatcttca tgcttgcggg gccagatttg aaggaggacc ttcagaaact
      661 caaaggttgc cgaactggtg aagcaaaatt gacgaaaggc tttaacctag ctgctcggtt
      721 catcattcac acagtgggac ctaagtacaa gagccgctac cgcactgcag cggagagttc
      781 cctgtacagc tgttacagaa acgtgcttca gctggcaaaa gaacagtcca tgtcttctgt
      841 tggcttctgt gtcatcaatt ctgccaagcg aggttatcca ctagaagatg caacacacat
      901 cgctcttcgt actgtgaggc ggttcctaga gatccatggg gaaaacattg aaaaagtagt
      961 atttgctgtc tcagaactcg aagaggccac ttaccaaaag ctgctacctc tgtacttccc
     1021 aaggtcatta aaggaggaga tccggtcatt gccgtaccta cctgcagaca ttggaaatgc
     1081 agaaggggag cccgtggtgc ccgagcggca aattagaatc agtgagaaac ccggtgcctc
     1141 ggaggacaat gaagaggaag atgaggatga aggcttggga gtggatctgt cttttattgg
     1201 ctctcatgct tttgctcgga tggaaggaga tattgacaag caaagaaagt tgatcctcca
     1261 gggacagttg tctgaagccg ccctgcagaa gcagcatcaa agaaattata atcgctggtt
     1321 atgccaagca agatctgaag acctgtctga tattgcttct ctgaaagctt tataccaaac
     1381 aggggtagat aactgtggcc gcacagtgat ggtggtagtt ggaagaaaca ttcctgtgac
     1441 actgatagat atggacaagg ccctcttgta ttttatccat gtaatggatc acattgctgt
     1501 gaaggagtat gtgctggtgt atttccacac actgaccagc gactacaatc acctggactc
     1561 cgacttcctg aagaaactct acgatgtggt tgacatcaaa tacaagagga atttgaaggc
     1621 tgtttatttc gttcatccaa cattccgttc aaaggtctca acatggtttt tcaccacctt
     1681 ttctgtctca ggactgaagg acaagatcca ccacgtagac agcctgcagc agctcttctc
     1741 tgccatatca ccagagcaga tagactttcc tccttttgtc cttgaatatg acgcgaggga
     1801 aaatgggcct tattttgcat cttatcctcc atcaccagat ttgtgacctg cgccttccca
     1861 gtgcttctcg gtcacaggat tccatttaac cacaactcgc cacctatcgg agtgatgttc
     1921 atttttgctg tacagatcca gagagctttt gtccccacct ctctggtatt tttttattga
     1981 ctatatattt tctggcacat aaacaatcta aaactggtag gccattctga actgcataca
     2041 ttttaaattt gtatatttgt atcaaatgga aatgctcatt tttagagcat taatagaaac
     2101 tggggatcaa cttttgagtg tctccagttt cctaaaggac actggactct gtcacacagg
     2161 ccaccaacgt tgctcacatc atctcttaca gtgcacgctt ccggactctg ttacataggc
     2221 cgccaccatt gttcatagca tctcttaaac agtgcacgct ctctctgtgt atttaagtgt
     2281 ttctcaaaat atatagaacc aatgtatgct aaacggatgc attgttccct cagatcctgg
     2341 ctttaatacc atttacattt tatacagacg atctgattat aatatagaat tgcccatgac
     2401 caagaatatt gaaatgtgta tgatcaaaac tgtaaaaacc ttcaacaaca tagaattggc
     2461 agattgttgg cccaagctac agctgagctg tgcgtgcttc ttgggttgtc tactttgttc
     2521 ctattgacac tgctctgatc tcagtgtgga gagcatgaga ctgtaccttc aactgtcttc
     2581 tttaatcatg tgactcgtga ctcgtctctt taccaaaaga atgtttgtgc tcccagcact
     2641 cctaagtaaa gaccatttcc caggactcca tccctgacca cattgctgtc ttctcagagt
     2701 catcaatgat tgtgttggtt cagtatcact tgagtcgcct acatcagtat gttgggagta
     2761 tgtaacagtg cacaaatcca aggaccagaa aattcacttt tcacaaaaca tttgccattc
     2821 aggctctgtg tgtgccttag tgagtgaaat ttagaattat acaacctacc tcagaggtaa
     2881 cataaagata ggatttagaa agaacctggc ttttccagga tgcagaggat tgagggaagt
     2941 ggggtgcgtg cggtagagtg tcttcattca gttctcaatg ggttaatggg aataaatata
     3001 tgtaaaggaa ttctataagg tgttctatgg tctttagcac cttttgaatg actgagtggt
     3061 gtttgggggt gggtcacaaa aaacaaatcc cacccagacc ctctgaccat ttcctgcttt
     3121 gtacagattt tcttttggct ctcctacaat gctgccattt aacaagagac atctgttact
     3181 cgttttaaag atttcttctt gaattaaggt caaagcatta ttgtttccat gtggctgtct
     3241 ttataggctt cttggtgccc acacccaccc acctccatcc ccttcactgt atcatgcatg
     3301 tttgcagttg agagaagaaa aagtaagaac tgaaagagat ggtaaagcag ggccctagca
     3361 ggatcctgcc agccctccca gggtcccagt ctgctgccca agcactcttc aggagaggga
     3421 aggaagcgtg cctctcttca cctttaagag ggtgccctcc cagtgatcat tttatgttgc
     3481 ttcgtataaa caagaagtgg ttcacatttc ttggataggt gtccttgtta gatatcaaag
     3541 ccactgctag ttctgtctcc ctacatggga aggactgcct gatatgttct aggtcatcga
     3601 gacaaccagt cagatatgag gtgtaaactt gctttcatga ctcctttaac cgtctcatcc
     3661 ttagatagag tgtctggtat tttaagttcc tcccatacag cagttagcgt gtcgtttgat
     3721 ctgaggcact gcttactaga agcagcaata gcacctgctc cactaatgct ggacttagct
     3781 accgagaact gacatctggc ctaaaccatt gccgctctgt ataatagaaa ctgtaagtta
     3841 ccttgctatt tgaacagaag aaattttata tgaacaatgt ctgtattttt tcagacagac
     3901 tcacattcag gctggcccta gacttgtgac cctctgtctc aatctctaga gtgctaggat
     3961 tataaatata tgctgtgata cccagatctc tgcaagttgc aatttattgt atgcaatatt
     4021 tttcaatgaa tgttcttttt ttatacctgt aagaatctct atttgcttat gttctagcct
     4081 aattaacaca attggagtgg aaaggtggta aaagactatt tagcaatgta tgtaaggatg
     4141 actaaagaaa gggaagggcc agtgtggggc tattcataat tgattgcttc ttagagggga
     4201 ggcagcatgg ccttggtatt gaaataagta agtaacctgt tatgtatgtg tgttctgtca
     4261 aaggtttgca tagcctggag aacacaggag gttttcaaga gtgtatcaga gaagaatgga
     4321 gtgcctgggt ggcgatccct aagacttggt gttaacccag agcaccaaca agtctttagt
     4381 ccaattaaac ccttggtcat gccaagaatt agctgaattg ctaaaggcac aatatagaaa
     4441 ttactagctt attaactgac ataggcaagc aggatagaat tgtaatggaa gtacatttgc
     4501 ttcagcacat acctgagttt ttctgactca cacacatcca agattctgga ccataaaatg
     4561 acctctcggg aggggttgag tggactaggt tgttacggca agtgtcactg ttaaaggttt
     4621 cgttactgtg tctctctggt ttcattgtga gagagtctgt tatatttgct ttttcagagg
     4681 aacccatttg tagtatttta agagcaatca ggatttttat tttgtatatc cccaagatca
     4741 aaggaacata cataaggaaa atggatatag gtgttttgtt tgtttgtttg tttgtttgtt
     4801 tgtttgtttt agtaagtttc tgaaagtcta aaaggaataa agtatccttc caaagaaggt
     4861 taagtataaa caccctagct aaagaaaaaa ataagtttgc ctatatcttc ctgggttttt
     4921 atttgtttgc ttttattgaa aaatagaatt gtagggatgg gcttataact ccatggtaga
     4981 gcagtcacat aacacacaca caagagcctg gaatctaccc ctagcaccag gaaaataaat
     5041 agatattgag aaagtaatgc ttttatttta cctttgtaac agttatcagg aaagtgataa
     5101 aatatactct tcaacacaag ctaaaaatca ttctttattt tcataatatg catctatgca
     5161 tagtttcaat tagttgacat ataaatagaa atcagaattt caggagttgg ataaagaaaa
     5221 aagtctagct gtggaatccc tacattgtgg tattaaagac caaaggtgcc acaaggtagc
     5281 ctggagactc ctctgattgg acttaaggga ctttccagtt agtttatacc ctaccacccc
     5341 acctctggta ccagatactg accccagagc cttgcatgct ggccaagcac tacaccactg
     5401 aaccatactg ccagtctcag tgtcctcata gtcatcgtaa gcaacgtgta gaaaaatgtt
     5461 ttctctgtac catctctgat gcagcctccc agcttacagt tagttctggg tttgtaattg
     5521 catgaaacct taaagctgga gactcattgt agaagtctag aaagacccaa gatcaaaaca
     5581 acatacactt caagatcccc catccccacc ccttgctatt ttcatagagg cgaggaagac
     5641 catcactcac tctcactgtc ttaacctgcc cacgacccag cattgcatct gagattacgg
     5701 ttttaacaga taagttggag tgaggtgcgt atgtatgtat gatccaagtc atgatctaag
     5761 cccagaggtg ataagggttc tttaatagat ttaagaaatg cagtgtatgc atataaatga
     5821 tttatgcata tgtgtgtatg cgtataaatg tagatagtct gcttttatag tctttgactg
     5881 gcttgtgtga ttcatgtgta aaagcagagc aataagagtg tagacacttt agtttacctt
     5941 aaacaggtgg tgtggtcatt ttgatatcag tggctctcat cagttaactt ttgttctaca
     6001 tttctaagat cagctgttgg attcaagaag aagagaatat tccctacatg aattatacta
     6061 aaacatcata actgttgaat atggttgata ctggctcaaa cataaaaaca gctgtcacat
     6121 cacaaaactt ttataatacg ttttgctaac atgagtgtac agttatttca gctgagccag
     6181 gacttgttta caccagatca cttttgctaa aacattcaag agcttaccat atgagtgatt
     6241 taaattgctg ttggccagag gacgcttaaa atcattttaa caggatttta aaacttgttt
     6301 gttgagaatg ctactgtgga cactcttgtc ttttaaaatg ttttagccct tcctgtggag
     6361 tggttggatc cccttcaggt agggtcccag tctttacaaa tagagcctgt gaaggccagt
     6421 agtgaaaatt actgtgtttg ggctggggag atggctcagc agtttacact gactgctctt
     6481 ccgaaggtcc tgagttcaaa tcccagcaac cacatggtgg ctcacaacca tccctaatga
     6541 aatctgactc cctcttctgg tgtgtctgaa gacagctaca gtgtacttac atataataat
     6601 aaatgaatct tgaggccgga
//
