LOCUS       NM_144891               2600 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus ganglioside-induced differentiation-associated protein
            1-like 1 (Gdap1l1), transcript variant 1, mRNA.
ACCESSION   NM_144891
VERSION     NM_144891.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2600)
  AUTHORS   Alalaiwe,A., Chen,C.Y., Chang,Z.Y., Sung,J.T., Chuang,S.Y. and
            Fang,J.Y.
  TITLE     Psoriasiform Inflammation Is Associated with Mitochondrial
            Fission/GDAP1L1 Signaling in Macrophages
  JOURNAL   Int J Mol Sci 22 (19), 10410 (2021)
   PUBMED   34638757
  REMARK    GeneRIF: Psoriasiform Inflammation Is Associated with Mitochondrial
            Fission/GDAP1L1 Signaling in Macrophages.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2600)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2600)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL591488.7.
            
            On May 13, 2022 this sequence version replaced NM_144891.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK141371.1, SRR7345562.1375947.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-259               AL591488.7         3751-4009
            260-452             AL591488.7         11318-11510
            453-626             AL591488.7         12783-12956
            627-724             AL591488.7         15850-15947
            725-839             AL591488.7         16785-16899
            840-2600            AL591488.7         18868-20628
FEATURES             Location/Qualifiers
     source          1..2600
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 84.28 cM"
     gene            1..2600
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /note="ganglioside-induced differentiation-associated
                     protein 1-like 1"
                     /db_xref="GeneID:228858"
                     /db_xref="MGI:MGI:2385163"
     exon            1..259
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..1183
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /note="isoform 1 is encoded by transcript variant 1;
                     GDAP1-L1"
                     /codon_start=1
                     /product="ganglioside-induced differentiation-associated
                     protein 1-like 1 isoform 1"
                     /protein_id="NP_659140.2"
                     /db_xref="CCDS:CCDS50791.1"
                     /db_xref="GeneID:228858"
                     /db_xref="MGI:MGI:2385163"
                     /translation="MATPNNLTPTNCSWWPISALESDAAKPVETPDAPEASSPAHWPK
                     ESLVLYHWTQSFSSQKVRLVIAEKGLACEERDVSLPQSEHKEPWFMRLNLGEEVPVII
                     HRDNIISDYDQIIDYVERTFTGEHVVALMPEAGSPQHARVLQYRELLDALPMDAYTHG
                     CILHPELTTDSMIPKYATAEIRRHLANATTDLMKLDHEEEPQLSEPYLSKQKKLMAKI
                     LEHDDVSYLKKILGELAMVLDQIEAELEKRKLENEGQTCELWLCGCAFTLADVLLGAT
                     LHRLKFLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDIHTTLLSAVIPNAFRLV
                     KRKPPSFFGASFLMGSLGGMGYFAYWYLKKKYI"
     exon            260..452
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            453..626
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            627..724
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            725..839
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            840..2600
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1173..1178
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /note="hexamer: AATACA"
     polyA_site      1208
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /note="major polyA site"
     regulatory      2191..2196
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /note="hexamer: AATAAA"
     polyA_site      2231
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
     regulatory      2557..2562
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
                     /note="hexamer: ATTAAA"
     polyA_site      2600
                     /gene="Gdap1l1"
                     /gene_synonym="Gdap1l"
ORIGIN      
        1 gaagaggcca tgtgatgctg ggcgccagcg agccgctgcc gagccgcctc cttcctcctt
       61 cctcggatcg cgggctgtca tggcgacccc caacaacctg acccccacca actgcagctg
      121 gtggcccatc tcggcactgg agagcgatgc agccaagccg gtggagaccc ccgacgcgcc
      181 cgaggcatcc agccccgccc attggcccaa ggagagcctg gttctgtacc actggaccca
      241 gtccttcagc tcgcagaagg tgcggctggt gatcgctgag aagggcctgg cctgtgaaga
      301 gagagatgtg agcctgcctc agagcgagca taaggaaccg tggttcatgc ggctcaacct
      361 gggtgaggag gtcccagtca ttatccacag agacaacatt atcagtgact atgaccagat
      421 cattgactac gtggaacgca ccttcacggg agagcatgtg gtggccttga tgcccgaggc
      481 gggcagccca caacacgccc gagtgctgca gtaccgggag ctgctggatg cgctgcccat
      541 ggacgcctac acacacggct gcatcctgca ccctgagctc accacagatt ccatgatccc
      601 caagtatgcc acggctgaga tccgcagaca tttagccaac gccaccacag acctcatgaa
      661 actggaccac gaggaggaac cacagctctc tgagccctac ctttctaaac aaaagaagct
      721 tatggccaag atcctggagc acgatgacgt gagctacctg aagaagatcc tcggggagct
      781 ggctatggtg ctggaccaga ttgaggcgga gctggagaag aggaaactgg agaatgaggg
      841 gcagacgtgc gagctgtggc tctgtggctg tgccttcacc ctggcggatg tcctcctggg
      901 agccaccctg caccgcctca agttcctggg actgtccaag aaatactggg aagacggcag
      961 ccggcccaac ctgcagtcct tctttgagag ggtccagaga cgctttgcct tccggaaagt
     1021 cctgggcgac atccacacca ctctgctgtc agctgttatc cccaacgcgt tccgactggt
     1081 caaacggaaa ccgccatcct tctttggggc atccttcctc atgggctcct tgggtgggat
     1141 gggctacttt gcctactggt acctcaagaa aaaatacatc tagagctggg ctggggcctg
     1201 gtgtgtgact ggcagtgtct ctgtgctgtg tgcttcccaa atcctgctca gttactcact
     1261 gtcccatgag cactggacag accttcctgc cccttcttcc tagtaattct attgtcagtg
     1321 tgacaacatt ccatagttta gaagtagaca ttgtcaacgc cgtgatttga ggctatggct
     1381 ctaccagagg acagagagag aaagcgagag aaaggcaatc caaatgtctt ttcttctgat
     1441 tcaaagactc aagacgttac tgtggggact ggttagcatc tgaggtgagt cccagaatgt
     1501 tccacccagc agggcccagg ttctgggagg tgctggggac tcagagggcc tgaccccagc
     1561 ctcccgttcc ctcttggcag ggacctcttc tataggacaa agccaacctg gagacccaac
     1621 tcatctaacc agtacctctg tctgggcctg gagagccaga gtccccgtgg aaagtctctg
     1681 aagaccagaa ggggtctcat tcttctcctg gacatggact gagacagcag tggctcaagc
     1741 caagcagtgg caccctaaaa cccatctctg gctgggatca actaattcca tgggcacacc
     1801 cttcacccct ttcctcctca ttggccagct ggtgagggtt ggcacttacc tagaaatccc
     1861 gaggcagcag cgcgtcagcc actcctacct tgagttgagt tcccaccctt cctggtgggc
     1921 ctctcagcaa aagccatgtt gaccttccct cccaaggtca ttctcagctc aagaacaggg
     1981 gtgcgtccct cacggtctcc acctctgaag gtccttctca gctcacgagc gggggtgcat
     2041 ccacctcccc cccttttttt tcccagaaac tcctcatact gcatgcagtg gggtctctcc
     2101 tccacactgc tccccgggtc tcactttcct gtgccttctg catgttgaga aagggtctgg
     2161 gtgtcactgc cgctcatgct tagagtcccc aataaagcat ccaggaggag cgattgcttt
     2221 tcatttctaa accgtgtggt cctactcaac tctcatttcc aaagtcagga cagagggctg
     2281 gaggtgcgag gtttcagatc cagctcttcc gaagatcaag ctcacctggc aaggcggcca
     2341 ttgactacct tcccagcaat tgggaggcca aggaaggaca gaaggacaga gacagatcgc
     2401 ctgccgcaag aagcttctga catggtcata agtccactta tgcatttggg taccgaattt
     2461 cagcttacag agtgtgttta catccatttg cttacctctg ctcttcgggg ttgaccacgg
     2521 catctgtccc catccaaatt tctaagtggg agaaacatta aaatgctcac acatgagagg
     2581 atatagcttg ttcctgaaaa
//
