LOCUS       XM_017318062            4704 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus glucosaminyl (N-acetyl) transferase 1, core
            2 (Gcnt1), transcript variant X1, mRNA.
ACCESSION   XM_017318062
VERSION     XM_017318062.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000085.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017318062.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4704
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="19"
     gene            1..4704
                     /gene="Gcnt1"
                     /gene_synonym="5630400D21Rik; B130048E03; C2 GlcNAcT;
                     C2GlcNAcT; C2GNT; C2GnT-L; IGnT"
                     /note="glucosaminyl (N-acetyl) transferase 1, core 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 38 ESTs, 319 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 11 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:14537"
                     /db_xref="MGI:MGI:95676"
     CDS             474..1772
                     /gene="Gcnt1"
                     /gene_synonym="5630400D21Rik; B130048E03; C2 GlcNAcT;
                     C2GlcNAcT; C2GNT; C2GnT-L; IGnT"
                     /codon_start=1
                     /product="beta-1,3-galactosyl-O-glycosyl-glycoprotein
                     beta-1,6-N-acetylglucosaminyltransferase isoform X1"
                     /protein_id="XP_017173551.1"
                     /db_xref="GeneID:14537"
                     /db_xref="MGI:MGI:95676"
                     /translation="MFFEMLRNLFRRRLFSCPTKYYFMLLVLSLITFSVLRIHQKPEF
                     FSVRHLELAGDDPYSNVNCTKILQGDPEEIQKVKLEILTVQFKKRPRRTPHDYINMTR
                     DCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHKIEMLDRLLRAIYMPQNFYCIHVDR
                     KAEESFLAAVQGIASCFDNVFVASQLESVVYASWSRVKADLNCMKDLYRMNANWKYLI
                     NLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYTVVDGKLTNTGIV
                     KAPPPLKTPLFSGSAYFVVTREYVGYVLENENIQKLMEWAQDTYSPDEFLWATIQRIP
                     EVPGSFPSSNKYDLSDMNAIARFVKWQYFEGHVSNGAPYPPCSGVHVRSVCVFGAGDL
                     SWMLRQHHLFANKFDMDVDPFAIQCLDEHLRHKALENLEH"
ORIGIN      
        1 tcctagggcg tggcgctggc tcggaggtct ggagcgcaga aggctgagcg cgccagtatc
       61 cgcttggcga gccgatccag cactgtttcg tgcgccctgc aggcacaggc tccagcatgg
      121 aatccatttt gaaagaagat tctggagaaa ctgcccattt tccaaggcag cgggatggaa
      181 gctgcatgtt cctacatggg ctgacatcgg ctgttggaaa gcctgctggg acatgtcatc
      241 gctggatgcc tggtgcttga taggaacttg gcagcacaat attccctctg agcaagtaca
      301 ggatgtcacc aggagtcaga gcctcaacag attcaggctt cctgtgattc taaacgtgat
      361 atcttgtccc gctgttaaac tggcatctca cctggccaca tcaggacact ggaggaaaca
      421 tcattggcat tcaaggccta gaagtttgtc ccaccacacc aggaagcctc tgaatgttct
      481 ttgaaatgct gagaaacttg tttcggagga gacttttctc ttgtcctaca aaatactact
      541 ttatgctcct tgtcctctct ttaattacct tctctgtttt aagaattcat cagaagcctg
      601 aatttttcag tgtcagacac ttggagctgg ctggagatga tccttacagc aatgttaatt
      661 gcaccaagat tttacagggt gacccagaag aaatccagaa ggtgaagctt gagatactaa
      721 cagtgcaatt caagaagcgc ccgaggcgga caccccatga ctatataaac atgacccgtg
      781 actgtgcctc tttcatcagg acacgcaaat atattgtgga gccccttact aaagaagagg
      841 taggctttcc aattgcatat tccattgtgg ttcatcataa gattgaaatg cttgacaggc
      901 tcctgagggc catctatatg cctcagaatt tctactgcat tcacgtggac agaaaagcag
      961 aggaatcctt tttagccgcg gtgcagggca tcgcatcctg ctttgataat gtctttgtgg
     1021 ccagccagtt ggagagtgtt gtttatgcgt cctggagtcg ggttaaggca gacctcaact
     1081 gcatgaagga cctgtacaga atgaatgcaa actggaagta cttgatcaat ctctgtggta
     1141 tggatttccc tattaaaacc aacctggaaa ttgtcaggaa gctcaagtgc tccacagggg
     1201 aaaacaacct ggaaactgag aagatgcctc ccaacaagga agagagatgg aaaaaaagat
     1261 acaccgttgt cgatgggaag ctgaccaaca ctggaatagt caaagcaccg cccccactga
     1321 aaactcctct cttttcaggc agtgcctact tcgtggtcac tagggaatat gtaggctacg
     1381 tgctggaaaa tgaaaatatt caaaagttga tggaatgggc acaggacaca tacagcccag
     1441 atgagttcct ctgggccacc atccaaagga tcccagaagt ccctggttct ttcccctcaa
     1501 gcaacaagta tgacttgtca gacatgaatg ccattgctag gtttgtcaag tggcagtact
     1561 tcgaaggcca tgtttccaac ggtgcccctt atccaccgtg cagtggagtc cacgtgcgct
     1621 ctgtgtgcgt cttcggagct ggtgacttga gctggatgct gcgccaacac cacctttttg
     1681 ccaataagtt tgacatggat gtcgacccct ttgccatcca gtgtttggat gaacatctga
     1741 ggcataaagc cctggagaac ttagaacact aagcgctgct ggcagccctg gggaagataa
     1801 ggttgctcaa actgtactct catctacttc ccatctctcc tatggggtcc tccttggggt
     1861 gatgacttta aagtcttcct gtcagggaaa ctgcatgaat cctacagaat atagttacag
     1921 gagaggctga taccttaagt gttctagagg aaatgtgagg actgagttag gatggctgga
     1981 ggctgggaag acttgatgga cagagggaac ccaggtgatt gggaaagagg ccagtgaaaa
     2041 atgtcagcct cgagaactaa tcagagaatc caggtactta atctaaatga gatttgattt
     2101 atgccaaaag tctcttgaag atttaaaaca cgataatttt cttgacatga ataaatttgt
     2161 agtagcaacc aatcacaaag atatgattca ccttgtatgt tttttggaat agaccttcgg
     2221 ttttactcta agttatcctt gtaaataatt tccttcctgc tgtgattttg ggtagtgagt
     2281 ctccacgcgt catctcaggg agcttaaaat atgtttggca cgaatggctc tgtcttcatt
     2341 tttgcttata agtacacata catgttttta aaagcaaata tcggtttcta gttcaccgat
     2401 atctacgaat attcttcagt tatttaaaag gagctagctg ggtgtgtggc ccctgcctgt
     2461 gaagcagggg gattgtttaa gctcaagtga tagtggcaag gctgggcaag ataacaagaa
     2521 ctcttctctt taaaaaggag aagagaatca actaaatttt acagatacgc atttgttctt
     2581 tatcttgtct tcccaaactg ttcgtactgt cacgctgcac acgttttact gcttgaggat
     2641 cctacatctg tgttttaggt ctttgatgtg acctaggcac ctgtaactag tgcagaaaac
     2701 tagggaggat gaagtaggca tccaagggaa gaagggaatc tactaaggcc gttgctaagc
     2761 ccctggcaca agtttaaggc tagtaattgg ctcggtccca agaaatgatc caattgtgtc
     2821 tcaggtggtg gcattctggc cttgagtatt catgttatct gctcactgga ttttcttaac
     2881 ctgctagctg ctagttcctt cctctcttgt ggccttgatg agggggaaag aagtagagaa
     2941 gtacacatgt gtcctcatga agtgtttgaa aagagctgtg gcattacagt gtattttcac
     3001 caaaaggcaa actgtctagg gtttcttcag ttctgtctct cctctccaat gcaggggatt
     3061 ggtttctttg ttttctctta gtattattta gctaaatcta aactgttcat ccagaattct
     3121 agtgaatgtg aagacttgcc atttgatttt aaataagaat cgttaccatg tacctttatt
     3181 tttaaaacat agctaacttt aataatacac acacacacaa aatcataata tcagacagtt
     3241 ttaagacatt caaagacgga agtatgtttt ctgtctcaaa gctataaaat attttttcta
     3301 gtgacaagtc ttattagaaa agctgagaat cagtagacga gctggggttt gttttggacc
     3361 aatagaaatg tgttggccat gggccaccag caatgatggt gatgcagctg ataccctcta
     3421 tactggcttc tgatttcttt cttttgtcca gtggatttgt ccaatggttc ttttagtaga
     3481 aaggctttta cttatgagac agggcatctt ttaaatctaa aaccagtggt tcctggtgac
     3541 atagcatttg tgtaaaccgc tgtgacctaa gcagtttttc tttttctttt tccatcttgc
     3601 aaaacacacg gctaaggcag tagtctaggg atccagcaag caggaacccc agcctggggt
     3661 caccggtggt caacatatct gtcccagttt gctttatact ggaggaacgc ttgaactttg
     3721 caaaactgga aattaatttt ttctaactac aagtactttt ttttttaatc aactgtttga
     3781 tgttattcat cttaaacact cttgttgtag tggggctcca tttcagttaa atggcaagtt
     3841 tgaggatttt ttatttttat tttttattat tttttttctt ttgccccact ataggagtaa
     3901 aactaggctc taggattcca gagcctcgag tcaatgctgt gaagccccat gctttgtgtt
     3961 acctcacctt cgcaccattg cacttgttga accatgtctg atgctgtagt ggcccagtgc
     4021 ctgacacagg gcttgtacag tgtctgttta ccgtgtctca ctggatttta tttttagagt
     4081 ttttcaatat gacttaaaac aagagaaatt cacacagtgg gataaataat tcaaaaaact
     4141 aaaaagggaa cctggaaatg aaaccttcag acactcgaga agagtacagt tccagttcac
     4201 gtggagagag gcaggctttg tttatgttgg agtcatgttt gttaataaac actaatttta
     4261 atgctatcat tgaggtcttt tatagaaaat ttttagtaat cacattcaca aataaaacag
     4321 gattctagtt cttaagtaaa tcaagattat atgtatcatt tcttagaaat aagttaattt
     4381 aaaaaggtta tttttaatag gcaattggcc taggtttttc cgaagctgag gtttaaaaaa
     4441 caaaacaaaa caacagtttc accttgaatc ggggaacatt aatatttcta aacatgtgtt
     4501 tgtgtcacgt atcgagtaga gttcatttta agagacttga tttccccttc ccatgatttt
     4561 tggttggtag aggctacgtg gggtagatgg gattggatgt tttcagttgt ttaaatcatt
     4621 gtcattaagt ataaaatgca aaattattta tgtttttgaa tgaatcattc atgtcacaaa
     4681 taaaatcagt cattgagaaa ccaa
//
