LOCUS       NM_177884               3360 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus GC-rich sequence DNA binding factor 2 (Gcfc2),
            transcript variant 1, mRNA.
ACCESSION   NM_177884
VERSION     NM_177884.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3360)
  AUTHORS   Ma,Y., Ren,Y. and Guan,J.
  TITLE     Knockdown of GC binding factor 2 by RNA interference inhibits
            invasion and migration of vascular smooth muscle cells
  JOURNAL   Mol Med Rep 20 (2), 1781-1789 (2019)
   PUBMED   31257544
  REMARK    GeneRIF: The inhibition of vascular smooth muscle cells
            proliferation and migration by knockdown of GCF2 by RNA
            interference was mediated by the PI3K/AKT signaling pathway.
REFERENCE   2  (bases 1 to 3360)
  AUTHORS   Maga,A.M., Navarro,N., Cunningham,M.L. and Cox,T.C.
  TITLE     Quantitative trait loci affecting the 3D skull shape and size in
            mouse and prioritization of candidate genes in-silico
  JOURNAL   Front Physiol 6, 92 (2015)
   PUBMED   25859222
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3360)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 3360)
  AUTHORS   Ballif,B.A., Villen,J., Beausoleil,S.A., Schwartz,D. and Gygi,S.P.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC129024.4.
            
            On Sep 1, 2022 this sequence version replaced NM_177884.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK078171.1, AK050789.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-260               AC129024.4         86410-86669         c
            261-389             AC129024.4         84454-84582         c
            390-614             AC129024.4         79456-79680         c
            615-712             AC129024.4         77437-77534         c
            713-828             AC129024.4         74327-74442         c
            829-1015            AC129024.4         70782-70968         c
            1016-1139           AC129024.4         68907-69030         c
            1140-1221           AC129024.4         67338-67419         c
            1222-1334           AC129024.4         66807-66919         c
            1335-1534           AC129024.4         65828-66027         c
            1535-1685           AC129024.4         63735-63885         c
            1686-1804           AC129024.4         61967-62085         c
            1805-1881           AC129024.4         60363-60439         c
            1882-1948           AC129024.4         58562-58628         c
            1949-2095           AC129024.4         56928-57074         c
            2096-2220           AC129024.4         53393-53517         c
            2221-3360           AC129024.4         51255-52394         c
FEATURES             Location/Qualifiers
     source          1..3360
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 35.81 cM"
     gene            1..3360
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /note="GC-rich sequence DNA binding factor 2"
                     /db_xref="GeneID:330361"
                     /db_xref="MGI:MGI:2141656"
     exon            1..260
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            261..389
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            390..614
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            615..712
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            713..828
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            829..1015
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1016..1139
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1140..1221
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1334
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1335..1534
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1535..1685
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1686..1804
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1805..1881
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1882..1948
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1949..2095
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2096..2220
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2221..3360
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      3222
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /note="major polyA site"
     polyA_site      3360
                     /gene="Gcfc2"
                     /gene_synonym="A130099G21; GCF2; Tcf9"
                     /note="major polyA site"
ORIGIN      
        1 aaggagacgc gccaatccta cttggaacat ggctctcagg ccccagagga ctttcaggcg
       61 gcgccaggtc gagtccagcg atagcgatag cgatagcgac ggcgcgaagg agcagagtgc
      121 ggaggagccg gcgtctgccg gcggccgaac agagggagcg gagcggccgc gcggggcccg
      181 cagcgcccgg ggccgaggtc gggtctgggc gagttcccgc cgcagcccgg gagctgctcc
      241 ccgcggggac ggcggagcag aatgcagaac agctgagctc tcaacggatg aagaggaagg
      301 aacacatacc ttgacaggaa gtaagggtga tcggagtccg tcctctgata gctcttgctc
      361 tctggaagaa agagacgttt cacccatagt tgagatcccc gatgcagctt ttattcaggc
      421 agcccgcaga aaacgggagt tggccaggac cccaggggac tacatttcat tggatgtaaa
      481 ccactcctgc tccacttctg actgtaagag aagcaatgaa gaggacccag agagcgatcc
      541 tgatgaccac gaaaagagaa tactgtttac cccaaagcct caaacactcc ggcaaagaat
      601 ggctgaagaa acgtcaatca ggagtgagga atcaagtgaa gagagtcagg aagatgaaaa
      661 ccaagacatc tgggagcagc agcagatgag gaaagcagtc aggatcccgg cgggacaaaa
      721 tacagacctt tcccacagca gtaagtctca aaccctgaag aagtttgata cttccatttc
      781 atttccaccg gtaaatttgg aaattataaa gaaacagtta aataatagat taacattact
      841 acaggagtct catcgctcac accagagaga atatgaaaaa tatgaacaag acatcaagag
      901 ttcaaagacg gctatccaga atcttgagag tgcatcagac catgctcaaa actacagatt
      961 ctacaggggc atgaaaagtt atgtggaaaa tataattgat tgtctaaatg aaaagattgt
     1021 cagcattgtg gaactagaat catccatgta cacgttgctt ttaaaacggt cagaagcact
     1081 tttgaaacgc aggcaagatg aattaaaatg cgaatcatca tatttgcagc agttatcacg
     1141 caaagatgag acatcggcaa atggaagctt ggctgtggat gaaaaggatc aacggatttt
     1201 agaagagatt gaagctcgga ggatgcagag aagacaggcc agggagctct cgggcagctg
     1261 tgaccatcag gaagggatgt ctagtgatga tgagctgtct cctgcagaga tgactaactt
     1321 ccacaagtgc caaggtgaca ttttacagga ttgtaagaaa gtttttgaag atgtgcatga
     1381 tgatttttgt aacgtccaga atattttatt gaaatttcag cagtggcgag aaaagtttcc
     1441 tgattcctac tatgaagcct tcgttggttt ctgcttacca aagcttttaa gtcccctgat
     1501 acgagttcag ttgcttgact ggaatcctct taagatggac tccataggtc tagacaagat
     1561 gccctggttc acagctataa cagagtttat ggagagcagc atggacgata tagggaagga
     1621 agatggttct gataaaaaaa tcttggctgc tgtcatcaac aaaacagttg ttcctcgact
     1681 tacagatttt gtagagacca tttgggatcc cctgtcaacc tcacagacaa gaagtttaac
     1741 agtgcactgc agagtggctt ttgaacagtt cgcttctgaa aatgaagtta gtaaaaataa
     1801 acaggattta cttaaatcta ttgttgcaag aatgaagaag tcaatagaag atgatatttt
     1861 tattcctcta tacccaaaga gctctgaaga aggaaaaatg tcaccacact ccaagttcca
     1921 agaaagacag ttctggggag ctctaaagct cttccgaaat attcttcttt ggaatggcct
     1981 tctcccagat gacaccttgc aagatctggg actggggaag ctgctgaatc gctaccttat
     2041 catctctctt actaatgccg tccctggacc agatgtggtt aaaaagtgca gccagatagc
     2101 agcatgtcta ccagaaagat ggtttgagaa ctctgctatg aggacatcaa ttccccagct
     2161 agaaaacttc attaagtttt tgttgcagtc tgcacagaaa ttatcctcaa gtgaattcag
     2221 gaatgaagtc agtgaaataa ttcttatcct ggtgaaggta aaagctctga ctcaagccga
     2281 atccctcaga gaagagcgtc ccctggagcc cctcccagcc cagagtacag gtgtttgagt
     2341 gcgccgtgtg ggagtgccca gagtcaagat gaccgtgtca cagccgatgc cgcctttgct
     2401 gggtgcccac ttggggtgtg gccaggcctc ctgatgcttc gtagctgagg gaagtaatgc
     2461 acagcagcag ccgagctcag tgtgctgctc ttttactctc tcaatccgga aggaaatgaa
     2521 gcaatctgac acacagaagc atgcctgaat caaaaccatc ttcagcaaac tccaatgttt
     2581 gcagatcagc taatgaggaa gctctatctc tggatggttt cttttatctt attctttggt
     2641 ggggactcgg tctcattctg aagtgtaagg aattacttat taaatagcta acacattttt
     2701 atacaaactg tcctttcaaa atctgtactg acttactgtg tgaaatcagt gcaagagagt
     2761 gccagtgatc tccagatttt gattcattgt caatttgtta aaaaaaaaaa aactttgaaa
     2821 aaagatttat ttttatatgt gtggtcatgt atgtacctgg gtgggtttag cactacctcc
     2881 atgtaggggc cagagggcat caggtcccct ggaactggaa tccaggaggt tgtgggccat
     2941 ctaatgtgct tggaaccaaa cccaggtcct cagaagagat cttcaccctc cctgtgaaga
     3001 atgaagctgt ggtctgagtc atctgtaagt ccttaagtga ggcttttttg ctatgttttg
     3061 tgtaactcat ggtaggacta aaaaggccat tgctctttta aatacagaaa tgtaaagtat
     3121 ttctctaatt aaggtagtct gaggcaaggt gattaagaaa ttatgaactt ttctcaaaat
     3181 gactgtatta atgttcttaa gtatatttgt taagcaactc aatgatgatc ctgtatttat
     3241 ttttccgtgt tgtcacttta gacatttgct cgttacaaaa gcatgtgtat atgtgtgcag
     3301 aaagttttgt atataaatgg cagagacttt atttttgctg ttaaagggca cttttggaaa
//
