LOCUS       NM_172116               1497 bp    mRNA    linear   ROD 16-JUN-2024
DEFINITION  Mus musculus glutamine amidotransferase like class 1 domain
            containing 1 (Gatd1), mRNA.
ACCESSION   NM_172116
VERSION     NM_172116.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1497)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1497)
  AUTHORS   Zambrowicz,B.P., Abuin,A., Ramirez-Solis,R., Richter,L.J.,
            Piggott,J., BeltrandelRio,H., Buxton,E.C., Edwards,J., Finch,R.A.,
            Friddle,C.J., Gupta,A., Hansen,G., Hu,Y., Huang,W., Jaing,C.,
            Key,B.W. Jr., Kipp,P., Kohlhauff,B., Ma,Z.Q., Markesich,D.,
            Payne,R., Potter,D.G., Qian,N., Shaw,J., Schrick,J., Shi,Z.Z.,
            Sparks,M.J., Van Sligtenhorst,I., Vogel,P., Walke,W., Xu,N.,
            Zhu,Q., Person,C. and Sands,A.T.
  TITLE     Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap
            screen to identify potential targets for therapeutic intervention
  JOURNAL   Proc Natl Acad Sci U S A 100 (24), 14109-14114 (2003)
   PUBMED   14610273
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY118625.1, AK081187.1, AK084273.1 and AK140975.1.
            
            On Oct 4, 2007 this sequence version replaced NM_172116.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK084273.1, AK140975.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                BY118625.1         1-48
            49-817              AK081187.1         9-777
            818-1495            AK084273.1         774-1451
            1496-1497           AK140975.1         1446-1447
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 86.75 cM"
     gene            1..1497
                     /gene="Gatd1"
                     /gene_synonym="D230016J19Rik; Fy-5; Pddc1"
                     /note="glutamine amidotransferase like class 1 domain
                     containing 1"
                     /db_xref="GeneID:213350"
                     /db_xref="MGI:MGI:2387178"
     exon            1..124
                     /gene="Gatd1"
                     /gene_synonym="D230016J19Rik; Fy-5; Pddc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..723
                     /gene="Gatd1"
                     /gene_synonym="D230016J19Rik; Fy-5; Pddc1"
                     /note="parkinson disease 7 domain-containing protein 1;
                     Parkinson disease 7 domain containing 1; glutamine
                     amidotransferase-like class 1 domain-containing protein 1;
                     ferry endosomal RAB5 effector complex subunit 5"
                     /codon_start=1
                     /product="glutamine amidotransferase-like class 1
                     domain-containing protein 1 precursor"
                     /protein_id="NP_742114.3"
                     /db_xref="CCDS:CCDS52444.1"
                     /db_xref="GeneID:213350"
                     /db_xref="MGI:MGI:2387178"
                     /translation="MASERLPSRPACLLVASGASEGVSAQSFVHCFTLASAAFNLQVA
                     TPGGKAIDFVDVTESNARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLA
                     SSGSLARILQHFRSESKPICAIGHGVAALCCATNEDRSWVFQGYSLTGPSVYELIRAP
                     GFARLPLIVEDFVKDSGAGFSASEPDAVHVVLDRHLVTGQNANSTVPAVQNLLFLCGS
                     RK"
     exon            125..201
                     /gene="Gatd1"
                     /gene_synonym="D230016J19Rik; Fy-5; Pddc1"
                     /inference="alignment:Splign:2.1.0"
     exon            202..307
                     /gene="Gatd1"
                     /gene_synonym="D230016J19Rik; Fy-5; Pddc1"
                     /inference="alignment:Splign:2.1.0"
     exon            308..415
                     /gene="Gatd1"
                     /gene_synonym="D230016J19Rik; Fy-5; Pddc1"
                     /inference="alignment:Splign:2.1.0"
     exon            416..510
                     /gene="Gatd1"
                     /gene_synonym="D230016J19Rik; Fy-5; Pddc1"
                     /inference="alignment:Splign:2.1.0"
     exon            511..604
                     /gene="Gatd1"
                     /gene_synonym="D230016J19Rik; Fy-5; Pddc1"
                     /inference="alignment:Splign:2.1.0"
     exon            605..716
                     /gene="Gatd1"
                     /gene_synonym="D230016J19Rik; Fy-5; Pddc1"
                     /inference="alignment:Splign:2.1.0"
     exon            717..1497
                     /gene="Gatd1"
                     /gene_synonym="D230016J19Rik; Fy-5; Pddc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctgcaggcg agccccgccc cgccccatcc ctcgcacaaa tatccgcctg ggctgtagcc
       61 atggcgtccg agcggctgcc aagcaggcct gcgtgtctcc tggtggccag cggcgcttcc
      121 gaaggtgtgt cagcccagtc cttcgtccac tgtttcacac tggccagtgc tgccttcaac
      181 ctacaggtgg ccaccccagg gggaaaggcc attgactttg tggatgtgac tgagagcaat
      241 gcccgatggg tacaagactt ccgcctcaag gcatacgcca gtcctgctaa gcttgagtcc
      301 atagatggtg cccggtacca tgccctcctg attcccagct gtcctggcgc cctgacagat
      361 cttgccagca gtgggtccct ggctcgaata ctgcagcact tccgctctga gagcaaaccc
      421 atctgcgcca ttggccatgg tgttgctgcc ctgtgctgtg ctaccaatga agataggtcc
      481 tgggtgttcc agggctacag tctgacaggg ccttcagtgt acgagctcat cagagcacct
      541 ggctttgccc gcctaccatt gatcgttgag gactttgtga aggactctgg tgctggcttc
      601 agtgccagtg agcccgacgc tgtgcacgtg gtgctggacc gccatctggt cactggccag
      661 aacgctaact ccacagttcc tgctgtccag aacctgctct tcctctgcgg cagccggaag
      721 taagcttgga tgcagtcctg gtggcctaga gacaaggact gaactcacca tggtctcctg
      781 tactgacact cgatgggaca ctcaagcctc catcaggacc ttgtggaatg ctggaagcct
      841 ccagggatta atacttgtgg actgtcagtc ctaatgtaga ctaggcaccc tttcctccat
      901 cccagcacag tgtcttggct ggccaggcag tccctgagaa ctccagattg acgattccaa
      961 gaagaattgc ccacgggatg tagtcagctg tggggtctca ggatggggcg ttactcttct
     1021 gtgggctttc ggctatttct gtcccttcca ctgttcatgg gaatcgtgtg gatggaccac
     1081 aggctggagc ttgctatgaa cttcctttct cgtctttcct tttttttttt tttttttaaa
     1141 aaacttgttt atttttatat ttcctatgca atggtgtttt gtttgagcat atgtctttat
     1201 gagggtgttg gataccctgg aactagaggt acagacagtt gtgagctgcc gcttgggtgc
     1261 tcaaaattga acccaggtct tctggaagag cagtcagtgc tcttaaccat tgagccatct
     1321 ctccagcctc ccctatcccc tccccctttt ttgagacagg gtttctctgt ggccttgcct
     1381 gtcctaaaac tcactctgta gaccaggctg gcctggacct cagagatcca ccggcctctg
     1441 cctctgcctc ccgtaggctg tgattaaagg catgtgccat cacctggctg tgaactc
//
