LOCUS       NM_026033               2547 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus GATA zinc finger domain containing 1 (Gatad1), mRNA.
ACCESSION   NM_026033 XM_982221
VERSION     NM_026033.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2547)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   2  (bases 1 to 2547)
  AUTHORS   Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T.,
            Bartel,D.P. and Kingston,R.E.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
REFERENCE   3  (bases 1 to 2547)
  AUTHORS   Tsuruga,T., Kanamoto,T., Kato,T., Yamashita,H., Miyagawa,K. and
            Mishima,H.K.
  TITLE     Ocular development-associated gene (ODAG), a novel gene highly
            expressed in ocular development
  JOURNAL   Gene 290 (1-2), 125-130 (2002)
   PUBMED   12062807
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ176388.1, AB047921.1, AK078416.1, BE947732.1, AK009556.1,
            AV173091.1 and AV352019.1.
            
            On Nov 27, 2007 this sequence version replaced NM_026033.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB047921.1, AK012921.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-19                CJ176388.1         10-28
            20-494              AB047921.1         1-475
            495-1585            AK078416.1         440-1530
            1586-1759           AB047921.1         1567-1740
            1760-2291           BE947732.1         17-548
            2292-2502           AK009556.1         251-461
            2503-2543           AV173091.1         223-263
            2544-2547           AV352019.1         183-186
FEATURES             Location/Qualifiers
     source          1..2547
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 2.26 cM"
     gene            1..2547
                     /gene="Gatad1"
                     /gene_synonym="2310031E19Rik; 2810047M21Rik;
                     8430439A17Rik; 9130430G15Rik; B330017N08Rik; Odag"
                     /note="GATA zinc finger domain containing 1"
                     /db_xref="GeneID:67210"
                     /db_xref="MGI:MGI:1914460"
     exon            1..557
                     /gene="Gatad1"
                     /gene_synonym="2310031E19Rik; 2810047M21Rik;
                     8430439A17Rik; 9130430G15Rik; B330017N08Rik; Odag"
                     /inference="alignment:Splign:2.1.0"
     CDS             318..1118
                     /gene="Gatad1"
                     /gene_synonym="2310031E19Rik; 2810047M21Rik;
                     8430439A17Rik; 9130430G15Rik; B330017N08Rik; Odag"
                     /note="ocular development associated; ocular
                     development-associated gene protein"
                     /codon_start=1
                     /product="GATA zinc finger domain-containing protein 1"
                     /protein_id="NP_080309.2"
                     /db_xref="CCDS:CCDS19066.1"
                     /db_xref="GeneID:67210"
                     /db_xref="MGI:MGI:1914460"
                     /translation="MPLGLKPTCSMCKTTSSSMWKKSPQGEILCHHCTGRGGGGAGVA
                     GGTGGGGGGGGGFGTTTFATTSAGPSQSNGGGGGKQSKQEIHRRSARLRNTKYKSAPA
                     AEKKVSTKGKGRRHIFKLKNPIKAPESVSTIVTAESIFYKGVYYQIGDVVSVIDEQDG
                     KPYYAQIRGFIQDQYCEKSAALTWLIPTLASPRDQFDPASYIIGPEEDLPRKMEYLEF
                     VCHAPSEYFKSRSSPFPTVPTRPEKGYIWTHVGPTPAITIKETVANHL"
     exon            558..683
                     /gene="Gatad1"
                     /gene_synonym="2310031E19Rik; 2810047M21Rik;
                     8430439A17Rik; 9130430G15Rik; B330017N08Rik; Odag"
                     /inference="alignment:Splign:2.1.0"
     exon            684..743
                     /gene="Gatad1"
                     /gene_synonym="2310031E19Rik; 2810047M21Rik;
                     8430439A17Rik; 9130430G15Rik; B330017N08Rik; Odag"
                     /inference="alignment:Splign:2.1.0"
     exon            744..927
                     /gene="Gatad1"
                     /gene_synonym="2310031E19Rik; 2810047M21Rik;
                     8430439A17Rik; 9130430G15Rik; B330017N08Rik; Odag"
                     /inference="alignment:Splign:2.1.0"
     exon            928..2547
                     /gene="Gatad1"
                     /gene_synonym="2310031E19Rik; 2810047M21Rik;
                     8430439A17Rik; 9130430G15Rik; B330017N08Rik; Odag"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2464..2469
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gatad1"
                     /gene_synonym="2310031E19Rik; 2810047M21Rik;
                     8430439A17Rik; 9130430G15Rik; B330017N08Rik; Odag"
                     /note="hexamer: AATAAA"
     polyA_site      2486
                     /gene="Gatad1"
                     /gene_synonym="2310031E19Rik; 2810047M21Rik;
                     8430439A17Rik; 9130430G15Rik; B330017N08Rik; Odag"
                     /note="major polyA site"
     regulatory      2526..2531
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gatad1"
                     /gene_synonym="2310031E19Rik; 2810047M21Rik;
                     8430439A17Rik; 9130430G15Rik; B330017N08Rik; Odag"
                     /note="hexamer: ATTAAA"
     polyA_site      2547
                     /gene="Gatad1"
                     /gene_synonym="2310031E19Rik; 2810047M21Rik;
                     8430439A17Rik; 9130430G15Rik; B330017N08Rik; Odag"
ORIGIN      
        1 ggggaccccg gcggcggcgg cggccgcccc ggatagcgtc ccctagggcg gagctggctt
       61 tcccgggagg ccgcgccgag tatcgggcct gcgtgccccg cgggcggccc agctccaggg
      121 ctgggtcccg ggctgcggga gcccgcttcc cgcctccagg ggtcagcggt ggccgctggg
      181 tcccggcgcg ggcggcccag cacctccgac cttgctcttc cagtcgccga ggtggccggc
      241 cgacccctgg gcggcccgtg cagacggccg ccattcccgt gtcgctgcgc ccgcgggggc
      301 cgcccgagcc ggccagcatg ccgctgggcc tgaagcccac ctgcagcatg tgcaagacta
      361 cgtcgtcctc catgtggaag aagagtccac agggcgagat cctctgccat cactgcacgg
      421 gccggggcgg cggcggcgcg ggagtggcgg gcgggaccgg gggcggtggc ggcggcggcg
      481 gtggcttcgg caccaccacc ttcgccacca cctcggccgg tccttcgcag agcaacgggg
      541 gcggcggcgg caagcagagt aagcaagaaa ttcacagaag gtcggcccgg ctcagaaata
      601 ccaaatacaa atcggctcca gctgctgaaa agaaagtttc cacgaaagga aaagggagaa
      661 gacatatttt taagttaaaa aatcctatca aagcgcctga atctgtttct accatagtca
      721 ctgcagagtc aatcttctac aagggagtat attaccaaat tggtgacgtt gtttctgtga
      781 ttgatgagca agatgggaag ccgtactatg ctcagatcag gggctttatt caggaccagt
      841 actgtgagaa gagtgccgcg ctgacatggc tcattcctac cctcgccagt cccagagacc
      901 agtttgatcc tgcatcatat ataatagggc cagaggaaga tcttccaagg aagatggagt
      961 acctggaatt tgtctgccac gcgccttctg agtatttcaa gtcaaggtcc tcaccatttc
     1021 ccacggttcc cacccgaccg gagaagggct acatatggac tcacgttgga cctactcctg
     1081 cgataactat taaggaaaca gttgccaacc acttgtagtt acaaaaccaa acctgggaca
     1141 tacttacttc gcaggtataa agcctcagtt ttaaccctag aacacacaca tcccaaaata
     1201 aagccaggtt tccagtttcc ttctatttat aatataacaa gatatgccac actcatttct
     1261 ctttataaac ctttttctct aagttcttga gatagggtct catgtatagc ccaggttcag
     1321 gttggcttgg ccttgagatc cctgcctcgt ctgccttgtg tgacaggtgt gttatgtagg
     1381 tagttaacgc cagaacttct tcatgaagtt cttacctgga aacaggactt gagaaaaatg
     1441 ttacctacta cccagtagtt gtattacctg cttagtgcct gttgcttaga aaatcacagg
     1501 gtgaaaaaag aatgaattga agtgaaataa taaatttaat atgtattttc ccaggcaaag
     1561 tggcagattc cagggaaatc attataaaca tgtagtgtct atttttcttt ataatttatt
     1621 tctatgaact cataaaatga attacatttt tattggtgta aaacactaag ttttagattt
     1681 ctctctttta ttctctctct tctctctgcc tctgtctctc tctacttttc ttttctgttt
     1741 tttttttttt tttttttttt aacctagaat ctcactctgt actcctggct gtcctactca
     1801 ttctgtagac cagactggca ttgaactcaa gagatctgct tgcttctgct tcccaagtac
     1861 tgggactaaa ggtgtgcgcc gccatgccag gcttaagttt tagatttctg atcaagaact
     1921 aaaccaaaat gtgagcagta tgtcttacaa agccacagtc ttctctctcg aagcagacct
     1981 tggctgcttt agtcctgtag aaagcagctg ctgggtgatg ggttagctct ggctcttcac
     2041 actgatctca caccagagcg gtcagccact tctgtagacc tgcctttgcc tgtcagcatc
     2101 agctgcttca gccagatctt tgatctgcat gcagcatccc ctcctcttac tgaggcagca
     2161 gcctctgtga gagtggcctg acgattgcta aggcagggac tgaaaggtca ttagttttga
     2221 tagtcaaaaa actcaaaccc agaccatgtg ctggaaattt ggatggtgtg ctttggttgt
     2281 atgatggggg agtgggcagg tacccacttg ctgcctctgt cctcatctat ccagacagac
     2341 cgttttaact ataggaattt atgagaattt gacttgatct taatgatttt catcaaaact
     2401 cttttaccct ttttctttag tcccaaagtt ggaaaaaagc accttcgtgc ttacataagg
     2461 tataataaag ttcattggaa atactattga aaatgatttt ctaaatgcta atattccagt
     2521 ttttgattaa aaaatatttc tacagtg
//
