LOCUS       NM_172895               2687 bp    mRNA    linear   ROD 05-AUG-2024
DEFINITION  Mus musculus golgi associated RAB2 interactor family member 5B
            (Garin5b), mRNA.
ACCESSION   NM_172895
VERSION     NM_172895.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2687)
  AUTHORS   Wang,H., Iida-Norita,R., Mashiko,D., Pham,A.H., Miyata,H. and
            Ikawa,M.
  TITLE     Golgi associated RAB2 interactor protein family contributes to
            murine male fertility to various extents by assuring correct
            morphogenesis of sperm heads
  JOURNAL   PLoS Genet 20 (6), e1011337 (2024)
   PUBMED   38935810
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC162034.6 and
            AC161197.9.
            
            On Feb 24, 2009 this sequence version replaced NM_172895.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.113143.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-324               AC162034.6         115442-115765       c
            325-479             AC162034.6         115070-115224       c
            480-735             AC162034.6         114736-114991       c
            736-760             AC161197.9         7814-7838
            761-837             AC161197.9         8034-8110
            838-941             AC161197.9         8400-8503
            942-994             AC161197.9         8584-8636
            995-1053            AC161197.9         8730-8788
            1054-2401           AC161197.9         9033-10380
            2402-2486           AC161197.9         14253-14337
            2487-2687           AC161197.9         14424-14624
FEATURES             Location/Qualifiers
     source          1..2687
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 2.75 cM"
     gene            1..2687
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /note="golgi associated RAB2 interactor family member 5B"
                     /db_xref="GeneID:243822"
                     /db_xref="MGI:MGI:3045311"
     exon            1..324
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /inference="alignment:Splign:2.1.0"
     CDS             160..2424
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /note="family with sequence similarity 71, member E2"
                     /codon_start=1
                     /product="Golgi-associated RAB2 interactor protein 5B"
                     /protein_id="NP_766483.3"
                     /db_xref="CCDS:CCDS57474.1"
                     /db_xref="GeneID:243822"
                     /db_xref="MGI:MGI:3045311"
                     /translation="MAPAVMRRLWRFFFPPPPPEPPKWVPILGEMQKTLQMAEYLPLR
                     PLPMFESNFTQVTNNGTPALLHNKSNKLTMGVAASLPGLMLPDILLIARPPEDEECSS
                     LILTRMIPLDLARLYVDDLPTWRLKLRLRSGRHYFLALDAPEHELAFLFDRWIRLINM
                     LRGPKLSKTPKTEPSVLEIPPEVTLASTWHFQVQSQGKLTVEVADPTFPCKIFSSHKP
                     KTKMKLTKPIKHSLRSQAVGDSVPLIWSQLQSSEDQMQVTKTKSYPHACSDRSEPLIH
                     VSDKASITIRTIFSIISNTINQAHKSDSEEDTSQGRLMETPSKCLSQNSTGFPVTVSS
                     NQLDTLLWAQNLEDLMNPEYATLSSLNTSHPPAFYIFPPNPSFLKSKDKARPTGSKKH
                     VSPLSSHKAACVPIESRKMPFILDQSNKVPAKPAPAQMASALPTPSRKTPTALWSRGK
                     ASGALGHFFKSQPSVSQKTPTTPGQPLKPQVITTPTQKTLTPNQKLLQAPAHSQKAMH
                     TKKDHLIVNIRSQKDPTAPYQKALNSRAKASGDPRTLQGGGVLERKTEGKQEPVLLVG
                     GQNTTVVDVRAQTMPLHLPFATTKKQSKEILISETQEALKGREKLEDCAHKMKETTVN
                     LPNLKSKETEMQKRVLTEEIAVENPYTEDNRPFSAEGLALAKMKIMANSKHQRLKPAT
                     ISLPSSFSVASNVSSMLANLPFDTSQTTFSDGSQVVVIEQSGSCTKVNTENTRHQMER
                     KPAEDLPVSSNPRI"
     exon            325..479
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /inference="alignment:Splign:2.1.0"
     exon            480..735
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /inference="alignment:Splign:2.1.0"
     exon            736..760
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /inference="alignment:Splign:2.1.0"
     exon            761..837
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /inference="alignment:Splign:2.1.0"
     exon            838..941
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /inference="alignment:Splign:2.1.0"
     exon            942..994
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /inference="alignment:Splign:2.1.0"
     exon            995..1053
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /inference="alignment:Splign:2.1.0"
     exon            1054..2401
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /inference="alignment:Splign:2.1.0"
     exon            2402..2486
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /inference="alignment:Splign:2.1.0"
     exon            2487..2687
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2661..2666
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /note="hexamer: ATTAAA"
     polyA_site      2687
                     /gene="Garin5b"
                     /gene_synonym="4930401F20Rik; Fam71e2"
                     /note="major polyA site"
ORIGIN      
        1 ataccagagt ctctcggccc tggggacact ccactttctg tcactgctga gcgcctgaca
       61 tccttgaagc ccaagggtcc aaagctggtg ggctggggtg ggggtcaggg ctccacttgg
      121 gtccaggatt cttgaatcta tacaccctca cccgctgtta tggcacccgc tgttatgagg
      181 cggctgtggc gctttttttt ccctccgcct cccccggagc ctccgaagtg ggttcccatc
      241 cttggagaga tgcagaagac ccttcagatg gccgaatacc tgcccctccg cccgctgccc
      301 atgttcgaga gtaactttac ccaggtaacc aacaatggga ctcctgcgtt attacacaac
      361 aaatccaaca agctgactat gggtgtcgca gcatccttgc ctggcctaat gctgcctgac
      421 attctgttga ttgctcggcc ccccgaggac gaggagtgct ccagtctcat cctaaccagg
      481 atgatcccac tagaccttgc ccgcctgtat gtcgatgatc tgcccacctg gcgactgaaa
      541 ctgcgtctga gatccggccg tcattatttc ctggcactgg atgcccctga acatgagctg
      601 gcctttctgt ttgaccgctg gattcgcctc atcaacatgc ttcgagggcc taaattatcc
      661 aagacaccaa aaacagaacc ctccgtgctg gaaatacccc cagaagtcac tcttgcctcc
      721 acttggcact ttcaggtcca gtctcaaggc aaacttacag ttgaagttgc tgatcccacc
      781 tttccttgca aaatattctc ttctcataaa ccaaagacca agatgaagct gaccaagcca
      841 atcaagcact cgctcaggtc tcaggctgtg ggtgactctg tgcctctcat ctggtcacaa
      901 ctgcaatctt ctgaggatca gatgcaagtc acaaaaacca agtcctatcc acatgcctgc
      961 tctgatagat ccgaacctct aatccatgtt tctgacaagg ccagcatcac catccggacc
     1021 atcttcagca tcatctctaa cacgataaac caggcccaca aatctgattc tgaggaagac
     1081 acaagccagg gtcgtctaat ggaaactcct tcaaagtgcc tttctcagaa cagcactggt
     1141 tttcctgtca cggtttcctc taatcaactg gacaccctcc tgtgggcaca aaaccttgaa
     1201 gatctcatga atcctgaata tgccacactg tcttccttga acacatctca ccctcctgcc
     1261 ttctacatct ttcctcccaa tccctccttt ctgaagtcca aagacaaggc cagacccaca
     1321 ggctcaaaga aacacgtgag cccactgtct tcccacaaag ctgcatgtgt ccccatcgaa
     1381 tcgaggaaaa tgccattcat tttggaccag tctaacaagg taccggctaa gcctgctcca
     1441 gctcagatgg cctcagccct tcccactccg tctcggaaga ccccgactgc actgtggtca
     1501 agagggaagg cttcaggtgc acttggccat ttctttaagt ctcagccttc tgtttcccag
     1561 aagaccccaa ccacccctgg gcagcccttg aagccccaag ttataactac cccaacccag
     1621 aaaactttaa caccgaatca gaagcttcta caagcacctg cacattccca gaaagccatg
     1681 cacaccaaaa aggaccatct aattgtaaat atccggtctc agaaggatcc aactgccccg
     1741 taccagaaag ctctcaactc ccgggcaaag gcctctgggg atcccaggac attacaggga
     1801 ggaggcgtgc ttgagagaaa gactgaaggg aaacaggaac ctgtgctgtt agtgggaggg
     1861 cagaatacaa cagtggtaga tgtgagggcc cagaccatgc ccctgcatct gccctttgcc
     1921 actaccaaga agcagtccaa ggagatcttg attagcgaaa cccaagaggc cttgaagggc
     1981 agggaaaagt tagaagactg tgcccacaag atgaaggaga caactgtgaa cttgcccaat
     2041 ctaaagtcca aggagacaga gatgcagaag agggtcttga ccgaggagat agctgttgag
     2101 aacccctaca cagaggacaa taggcctttc tctgcagagg ggctcgccct tgccaagatg
     2161 aagatcatgg ccaactccaa acaccagcga ctgaagccag ctactatctc tctgccctcc
     2221 tcattctctg tggcttccaa tgtgtcttcc atgttggcca atttgccctt tgacaccagc
     2281 cagacaacct tttcagatgg atcacaagta gtagtcatag aacaatcagg gtcctgtact
     2341 aaagtgaaca cggagaacac acggcaccag atggagagga agcctgcaga ggacttgcca
     2401 gtaagcagca acccaaggat ttaagataac ataatgcagg agactcgatc tgtcagcaaa
     2461 ttgtccagaa gaccaatgag gccaaggcca gcagggtgct gtgtaccccg actgtaaggc
     2521 gcagagtgct gagaacaccg agtgtggtcg cggagggtgg agggggatgg gatcctcctt
     2581 ctcccataga gaccagagct agatataagt ttattggtga ggatggggcg gggcagaggg
     2641 agaagctcaa ctttgtaggg attaaaagtc ctagtctgag actcaaa
//
