LOCUS       NM_001013783            2190 bp    mRNA    linear   ROD 01-AUG-2024
DEFINITION  Mus musculus golgi associated RAB2 interactor 3 (Garin3), mRNA.
ACCESSION   NM_001013783 NR_075102 XM_484009
VERSION     NM_001013783.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Wang,H., Iida-Norita,R., Mashiko,D., Pham,A.H., Miyata,H. and
            Ikawa,M.
  TITLE     Golgi associated RAB2 interactor protein family contributes to
            murine male fertility to various extents by assuring correct
            morphogenesis of sperm heads
  JOURNAL   PLoS Genet 20 (6), e1011337 (2024)
   PUBMED   38935810
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 2190)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2190)
  AUTHORS   Fukuda,M., Kanno,E., Ishibashi,K. and Itoh,T.
  TITLE     Large scale screening for novel rab effectors reveals unexpected
            broad Rab binding specificity
  JOURNAL   Mol Cell Proteomics 7 (6), 1031-1042 (2008)
   PUBMED   18256213
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB615215.1, AL662806.20 and AV282256.1.
            
            On or before Feb 15, 2013 this sequence version replaced
            NR_075102.1, NM_001013783.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC150988.1, AB473727.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-750               BB615215.1         2-751
            751-2136            AL662806.20        142190-143575
            2137-2190           AV282256.1         179-232
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 27.83 cM"
     gene            1..2190
                     /gene="Garin3"
                     /gene_synonym="Fam71b; Gari-l3"
                     /note="golgi associated RAB2 interactor 3"
                     /db_xref="GeneID:432552"
                     /db_xref="MGI:MGI:3650836"
     exon            1..699
                     /gene="Garin3"
                     /gene_synonym="Fam71b; Gari-l3"
                     /inference="alignment:Splign:2.1.0"
     exon            700..2190
                     /gene="Garin3"
                     /gene_synonym="Fam71b; Gari-l3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2168..2173
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Garin3"
                     /gene_synonym="Fam71b; Gari-l3"
                     /note="hexamer: AATAAA"
     polyA_site      2189
                     /gene="Garin3"
                     /gene_synonym="Fam71b; Gari-l3"
                     /note="major polyA site"
ORIGIN      
        1 agaaaccttg ctgggagatg ggcaattgcc ttcactccct ccctttcttg ggaacacgat
       61 ttgtggctgg ccgagatgcc tgggatgaag agaaccatga gcagtgaatg tttgctacct
      121 tattacactg cccacagtta ccgatccatg ggcgtgttca acacctccat gggaaaccta
      181 caacgacagc tgtacaaggg aggagagtat gatattttca agtatgcacc aatgtttgag
      241 agcgacttta tccagattag caaaagagga gaggtgattg atgttcacaa ccgcgtccga
      301 atggtgactg tgtgcatcgc atctaccagc ccggtccttc cactgcccga tgtcatgttg
      361 ctggcccgac cagctaaagt ctgtgaagaa catgccagac gagcccgatt catcaagggg
      421 aaaggttgca agccttcaaa gactttagag ctcaccaggc tgcttccttt gaagtttgtc
      481 aagatctctg ttcacgatca cgagaaacag cagctgcgcc tgaagcttgc cacaggccga
      541 actttttacc tacagctgtg tccctcttct gacgcacgag aagacctctt ttgttattgg
      601 gaaaagcttg tctatctcct gaggccacca atgaccaatt gcatcagtaa ctcaacgctt
      661 cccactggcg agacaagcgt tgacaccaaa agcacacttg tctcagagat ccgtggagaa
      721 ggggatcaga attctaggcc tcaatcatcc ccaactgtgt cagaagccac ttctgctgca
      781 tttgcaggag gagagaggac acaaccggct gctgcagctg ctgttactcc agtatctgcc
      841 aaagcaaggg cggcagggac ggcaggggca gcagcaggga cggcaggggc agcagcaggg
      901 acggcagggc cagcagcagg gccagcagca gggacggcag ggccagcagc agggacggca
      961 ggggcagcag cagggacggc aggggcagca gcagggacgg caggggcaac agcagggacg
     1021 gcaggagcaa cagcagggat ggcaggagca acagcaggga cagcagccga gacagcaggg
     1081 acagcagccg agacagcagg ggcagcaagg gcagcaggtg gccccatggc tgcagcagta
     1141 gcagccccct cagcaggtat gacaaaagcg gagacagcta caagtccgac ttcaggtgtc
     1201 ataagcctgg cagcaacaac aaccaagcct ccaggttcag gccaggtagc cgcagccatg
     1261 ataggatcag ctgccaaaga tcaagtagga ggtgaatcca gcaaggccat ggcacttgct
     1321 gcaaacatca ccttagaaaa tgtagacgtg gccttggcag gagctgccaa ttctatttcg
     1381 gagtcccctc ctgcaggggg tgatgctagt ggctccccag acaccggcct gaacgtggca
     1441 tttgcaggca gcatcaagac caagtcgcct gctgaagata aacctgaagc tcccctcgtg
     1501 tcaaccttgc agagcgaagg ctacatgtgt gaaagggatg ggagccagaa ggtttcccaa
     1561 actagctctg aagcaaagga aaagagagag cgacgagaaa aggacagaac gagtagcagg
     1621 aaaagttccc accaccgcag gacaggcatg agtcgccaca gttccaagga caagagccgg
     1681 aaaacatctt cctaccggtc tgtatctggg aaaacgagag aggacaaagg gaaagggcat
     1741 ggcagattaa ggggcaagag acacagctcc tctcacaaaa gtgagtccag gactggtcac
     1801 aaaaccagga agaaccgatc accagctggc ttggggtctg tgagtaagag agctactaag
     1861 attacatcat ttttcaggag tttcctagta aggcctactc caaaagcagg ggacacctca
     1921 tgtgatagag gaggggtaga cattgtgaca aagttggtag agaagaagca ggacatagag
     1981 gccgtgatgg agaaaagcaa ggattcagag ttcaaagata ccgtaatctc tgagacaatg
     2041 gagaagatca tccttgaaac caaatccatt taaagaagat ccagagctgg aagcagcccc
     2101 agagaccagg gctcagagga acagtaggga gccaagtcca gcttgcttcc ataaaggcac
     2161 tttcaataat aaaggttacg taactccaag
//
