LOCUS       NM_001101486            1180 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus golgi associated RAB2 interactor 1A (Garin1a),
            transcript variant 1, mRNA.
ACCESSION   NM_001101486 XM_001477461 XM_001477480 XM_908572 XM_920931
VERSION     NM_001101486.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1180)
  AUTHORS   Morohoshi,A., Miyata,H., Oyama,Y., Oura,S., Noda,T. and Ikawa,M.
  TITLE     FAM71F1 binds to RAB2A and RAB2B and is essential for acrosome
            formation and male fertility in mice
  JOURNAL   Development 148 (21) (2021)
   PUBMED   34714330
REFERENCE   3  (bases 1 to 1180)
  AUTHORS   Fukuda,M., Kanno,E., Ishibashi,K. and Itoh,T.
  TITLE     Large scale screening for novel rab effectors reveals unexpected
            broad Rab binding specificity
  JOURNAL   Mol Cell Proteomics 7 (6), 1031-1042 (2008)
   PUBMED   18256213
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC050974.1 and AC044807.4.
            
            On May 2, 2018 this sequence version replaced NM_001101486.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC050974.1, AB473724.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1175              BC050974.1         1-1175
            1176-1180           AC044807.4         10370-10374
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 12.36 cM"
     gene            1..1180
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; GARI"
                     /note="golgi associated RAB2 interactor 1A"
                     /db_xref="GeneID:245884"
                     /db_xref="MGI:MGI:2141439"
     exon            1..277
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; GARI"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..1018
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; GARI"
                     /note="isoform 1 is encoded by transcript variant 1;
                     Golgi-associated Rab2B interactor; family with sequence
                     similarity 71, member F2; protein FAM71F2; Golgi
                     associated RAB2 interactor protein 1A"
                     /codon_start=1
                     /product="Golgi-associated RAB2 interactor protein 1A
                     isoform 1"
                     /protein_id="NP_001094956.1"
                     /db_xref="CCDS:CCDS51735.1"
                     /db_xref="GeneID:245884"
                     /db_xref="MGI:MGI:2141439"
                     /translation="MSKIRGLPPAIRDPGPGVELGVVDGLLCQLIHSPEFNLFSDSVV
                     FESTFIQVTKQGNWMDAYERSATMILGVTSSVPSLPLPNILLMANVTWPHGPFSTCST
                     LGAPVITLSRILPLKYVELQIYDRTQRILRVRTVTEKIYYLRLHEKHPQAVFQFWIRL
                     VKILQKGLSITTKDPRIQFTHCLVPKMSNSSTETATESSLPASSQNSEAIMLLAAERN
                     SSSLLELSNRHQTSRDRHTDTATETDNSGNCKSTPLVASSASMPMRAALTHSLWEQED
                     SNENFLQAPVASSLGENLLGP"
     exon            278..459
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; GARI"
                     /inference="alignment:Splign:2.1.0"
     exon            460..709
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; GARI"
                     /inference="alignment:Splign:2.1.0"
     exon            710..828
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; GARI"
                     /inference="alignment:Splign:2.1.0"
     exon            829..1180
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; GARI"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1163..1168
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; GARI"
                     /note="hexamer: AATAAA"
     polyA_site      1180
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; GARI"
                     /note="major polyA site"
ORIGIN      
        1 ataagcatca gggagctgga gctgggaggt gggggggagc tgtagttcca ccgacacctt
       61 ggagttgggc tgggtctgtg tggagcccca gagatgttcc ccagcccatt cttcttaaga
      121 accaatgagt aaaattaggg gcctccctcc tgcaatcagg gacccaggcc ctggagtgga
      181 actcggagta gtggatggcc tgctttgtca actgattcat tctccagaat tcaacttgtt
      241 ctctgactct gtggtgtttg agagcacctt tatccaggtc actaagcaag gaaactggat
      301 ggatgcctat gaaagatctg ccactatgat ccttggagta acctcttctg tgccctcctt
      361 gccactcccc aatatcctcc tgatggccaa tgtcacctgg cctcacggtc cgttttccac
      421 ctgtagcaca cttggtgccc ctgtcatcac cctcagcagg attctccccc tgaagtatgt
      481 ggagctgcaa atctatgacc ggacgcagcg catcctccgc gttaggacag tgacggagaa
      541 gatctactac ctgaggctcc acgagaaaca tccacaggct gtgtttcagt tctggatccg
      601 gttggtgaaa attttacaga aaggtctgtc catcaccacc aaagacccaa gaatccagtt
      661 cactcactgc ctggtgccca agatgtccaa ctcctccact gaaacagcaa ctgaaagcag
      721 cctgcctgca tcctcccaga acagcgaggc cataatgctg ctggcagccg agcggaacag
      781 cagcagtctc ttagaactct caaacagaca ccagacctca agagacaggc acactgatac
      841 tgccacagaa acagacaact ccggcaactg caagtcaacc ccactggtgg catcttcagc
      901 tagtatgccc atgagagctg ctttgaccca cagtctctgg gaacaagagg actcaaatga
      961 gaacttcctg caggctcctg tagccagctc cctaggagag aacttgttgg gaccctaata
     1021 cctagccaga gtcgggtgtt ggccctgtct tctatgtcta tgtgtttgcg ctgcctccta
     1081 caatgctgct tcctgcagtg ggccaagtaa ccatgggagc gatgatatgg ttcttacacc
     1141 aagatgctcc tctacttcca ccaataaacc tccaatggag
//
