LOCUS       NM_026578               1271 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus GAR1 ribonucleoprotein (Gar1), mRNA.
ACCESSION   NM_026578
VERSION     NM_026578.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1271)
  AUTHORS   Kappei,D., Butter,F., Benda,C., Scheibe,M., Draskovic,I.,
            Stevense,M., Novo,C.L., Basquin,C., Araki,M., Araki,K.,
            Krastev,D.B., Kittler,R., Jessberger,R., Londono-Vallejo,J.A.,
            Mann,M. and Buchholz,F.
  TITLE     HOT1 is a mammalian direct telomere repeat-binding protein
            contributing to telomerase recruitment
  JOURNAL   EMBO J 32 (12), 1681-1701 (2013)
   PUBMED   23685356
REFERENCE   2  (bases 1 to 1271)
  AUTHORS   Egan,E.D. and Collins,K.
  TITLE     Specificity and stoichiometry of subunit interactions in the human
            telomerase holoenzyme assembled in vivo
  JOURNAL   Mol Cell Biol 30 (11), 2775-2786 (2010)
   PUBMED   20351177
REFERENCE   3  (bases 1 to 1271)
  AUTHORS   Pogacic,V., Dragon,F. and Filipowicz,W.
  TITLE     Human H/ACA small nucleolar RNPs and telomerase share
            evolutionarily conserved proteins NHP2 and NOP10
  JOURNAL   Mol Cell Biol 20 (23), 9028-9040 (2000)
   PUBMED   11074001
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC111097.10 and AK021256.1.
            
            [WARNING] On Apr 6, 2024 this sequence was replaced by NM_026578.4.
            
            On Jun 15, 2010 this sequence version replaced NM_026578.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC048685.1, AK021256.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139, SAMN01164140
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-240               AC111097.10        63028-63267
            241-1263            AK021256.1         2-1024
            1264-1271           AC111097.10        69505-69512
FEATURES             Location/Qualifiers
     source          1..1271
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 59.16 cM"
     gene            1..1271
                     /gene="Gar1"
                     /gene_synonym="C430047J18Rik; Nola1"
                     /note="GAR1 ribonucleoprotein"
                     /db_xref="GeneID:68147"
                     /db_xref="MGI:MGI:1930948"
     exon            1..279
                     /gene="Gar1"
                     /gene_synonym="C430047J18Rik; Nola1"
                     /inference="alignment:Splign:2.1.0"
     exon            280..538
                     /gene="Gar1"
                     /gene_synonym="C430047J18Rik; Nola1"
                     /inference="alignment:Splign:2.1.0"
     CDS             292..987
                     /gene="Gar1"
                     /gene_synonym="C430047J18Rik; Nola1"
                     /note="H/ACA small nucleolar RNPs; snoRNP protein GAR1;
                     GAR1 ribonucleoprotein homolog; nucleolar protein family A
                     member 1; nucleolar protein family A, member 1 (H/ACA
                     small nucleolar RNPs)"
                     /codon_start=1
                     /product="H/ACA ribonucleoprotein complex subunit 1"
                     /protein_id="NP_080854.1"
                     /db_xref="CCDS:CCDS38634.1"
                     /db_xref="GeneID:68147"
                     /db_xref="MGI:MGI:1930948"
                     /translation="MSFRGGGRGGFNRGGGGGGFNRGGGSNNHFRGGGGGGGGSFRGG
                     GGGGGGSFRGGGRGGFGRGGGRGGFNKFQDQGPPERVVLLGEFMHPCEDDIVCKCTTE
                     ENKVPYFNAPVYLENKEQVGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPY
                     KLLPLQRFLPRPPGEKGPPRGGGGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGFR
                     GGRGGGGFRGRGH"
     exon            539..693
                     /gene="Gar1"
                     /gene_synonym="C430047J18Rik; Nola1"
                     /inference="alignment:Splign:2.1.0"
     exon            694..753
                     /gene="Gar1"
                     /gene_synonym="C430047J18Rik; Nola1"
                     /inference="alignment:Splign:2.1.0"
     exon            754..904
                     /gene="Gar1"
                     /gene_synonym="C430047J18Rik; Nola1"
                     /inference="alignment:Splign:2.1.0"
     exon            905..973
                     /gene="Gar1"
                     /gene_synonym="C430047J18Rik; Nola1"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1271
                     /gene="Gar1"
                     /gene_synonym="C430047J18Rik; Nola1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acttccgcca cctctagcgc ggtggccctt gcgtggatga ggtgggggcg ggggggggtc
       61 acgctggacg ctattgtttc tcttccggtg ctgtgtgctc tactcggtaa ggcgttggga
      121 ccgctgcgtc cggtagtgac gggcccttcc tgcaaaccag cccttccaat ttctagtctg
      181 gtaacattgg acggctacgg tggccgagga ggtttgagcg cgccggaagt gtccctccgc
      241 gcgcgcgcgc cgggctaggc tggagacgca cgtggcgcgg ccggagagag catgtctttc
      301 cgaggcggag gtcgcggagg ctttaatcgc ggtggtggag gcggaggctt caaccgtggc
      361 ggcggcagca acaaccactt ccgagggggc ggcggaggcg gcggcggcag tttcaggggc
      421 ggaggcggcg gcggcggcgg cagtttcagg ggcggcggcc gaggaggatt tggacgaggg
      481 ggcggtcgtg gaggctttaa taaatttcaa gatcaagggc ctccagaacg tgtcgtcttg
      541 ttaggagaat tcatgcatcc ctgtgaagat gacatcgtgt gtaaatgtac caccgaggag
      601 aacaaggtgc cctacttcaa cgcccctgtt tacttagaaa acaaagagca agtcgggaaa
      661 gtggatgaga tatttggaca gcttagagat ttttattttt cagttaagtt gtcagaaaac
      721 atgaaggcat cttcctttaa aaagctacag aagttctata tagacccata caagctgctg
      781 ccgctgcaga ggtttctgcc tcgtcctcct ggtgagaaag gacctcccag aggtggcggc
      841 ggtggcggca ggggaggtcg aggaggagga agaggaggcg gtggccgagg tggtggaaga
      901 ggtggtggtt ttagaggagg cagaggagga ggtgggggct tcagaggagg aagaggaggt
      961 ggcggattcc gaggaagggg acattagctg tccagttggc agacctgacc acttgtgttc
     1021 ccgctgcgtg gcctgcttct gctatggttg acgtctgtgt ctggagcagt cttgaggagg
     1081 ccattccgtc agtggagctg agtcagcagc atcgcgtaga aacaagggga gcagggcagt
     1141 tagctctgct cagagaggag aaccccgctt tgtacagaac ctggcactct gtgggtgctt
     1201 agagaagaca ggacttttca tttgaagcat atttggattt tttaaataaa attttttatt
     1261 tccttaactt a
//
