LOCUS       NM_175032               5311 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferase-like 6 (Galntl6), mRNA.
ACCESSION   NM_175032
VERSION     NM_175032.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5311)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5311)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 5311)
  AUTHORS   Miller,J.A., Nathanson,J., Franjic,D., Shim,S., Dalley,R.A.,
            Shapouri,S., Smith,K.A., Sunkin,S.M., Bernard,A., Bennett,J.L.,
            Lee,C.K., Hawrylycz,M.J., Jones,A.R., Amaral,D.G., Sestan,N.,
            Gage,F.H. and Lein,E.S.
  TITLE     Conserved molecular signatures of neurogenesis in the hippocampal
            subgranular zone of rodents and primates
  JOURNAL   Development 140 (22), 4633-4644 (2013)
   PUBMED   24154525
REFERENCE   4  (bases 1 to 5311)
  AUTHORS   Peng,C., Togayachi,A., Kwon,Y.D., Xie,C., Wu,G., Zou,X., Sato,T.,
            Ito,H., Tachibana,K., Kubota,T., Noce,T., Narimatsu,H. and Zhang,Y.
  TITLE     Identification of a novel human UDP-GalNAc transferase with unique
            catalytic activity and expression profile
  JOURNAL   Biochem Biophys Res Commun 402 (4), 680-686 (2010)
   PUBMED   20977886
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC135357.3, AC134838.4, AC116475.7, AC116875.10 and AC116825.23.
            
            On Apr 9, 2022 this sequence version replaced NM_175032.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GU220061.1, SRR9219380.56696.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849382,
                                           SAMN00849383 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-507               AC135357.3         139981-140487
            508-616             AC134838.4         67704-67812
            617-755             AC134838.4         130736-130874
            756-922             AC116475.7         145830-145996       c
            923-1108            AC116875.10        173796-173981       c
            1109-1292           AC116875.10        169689-169872       c
            1293-1410           AC116875.10        95816-95933         c
            1411-1518           AC116875.10        68934-69041         c
            1519-1740           AC116875.10        48604-48825         c
            1741-1857           AC116875.10        15631-15747         c
            1858-2007           AC116825.23        8824-8973
            2008-5311           AC116825.23        26505-29808
FEATURES             Location/Qualifiers
     source          1..5311
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 30.72 cM"
     gene            1..5311
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /note="UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase-like 6"
                     /db_xref="GeneID:270049"
                     /db_xref="MGI:MGI:1913581"
     exon            1..507
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     CDS             370..2175
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /EC_number="2.4.1.41"
                     /note="UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase 20"
                     /codon_start=1
                     /product="polypeptide
                     N-acetylgalactosaminyltransferase-like 6"
                     /protein_id="NP_778197.2"
                     /db_xref="CCDS:CCDS22318.2"
                     /db_xref="GeneID:270049"
                     /db_xref="MGI:MGI:1913581"
                     /translation="MKRKQKRFLQMTLLFTVALIFLPNIGLWSLYKDKHLVKSAEPAE
                     HQTFPLGLGDGQFYSWTDGLRRKDWHDYESIQRDALRSGKGEHGKPYPLTEEDRDDSA
                     YRENGFNIFVSNNIALERSLPDIRHANCKHKMYLERLPNTSIIIPFHNEGWTSLLRTI
                     HSIINRTPESLIAEIILVDDFSDREHLKDKLEDYMARFSKVRIVRTKKREGLIRTRLL
                     GASVARGEVLTFLDSHCEVNVNWLPPLLNQIALNHKTIVCPMIDVIDHNHFGYEAQAG
                     DAMRGAFDWEMYYKRIPIPPELQRADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGL
                     EIWGGEQYEISFKVWMCGGEMFDVPCSRVGHIYRKYVPYKVPSGTSLARNLKRVAETW
                     MDEFAEYIYQRRPEYRHLSTGDISAQKELRKRLKCKDFKWFMAAVAWDVPKYYPPVEP
                     LPAAWGEIRSVAANLCVDSKHGATGTELRLDVCVKDGSERTWSHEQLFTFGWREDIRP
                     GEPLHTRKFCLDAISHSSPVTLYDCHGMKGNQLWGYREDRTLFHPVSNSCMDCNPSEK
                     KIFMARCDPLSETQQWIFEHINMTVLEKNSHYAIS"
     exon            508..616
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     exon            617..755
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     exon            756..922
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1108
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1292
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1410
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     exon            1411..1518
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     exon            1519..1740
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     exon            1741..1857
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     exon            1858..2007
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     exon            2008..5311
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3108..3113
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /note="hexamer: AATAAA"
     polyA_site      3133
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /note="major polyA site"
     regulatory      5286..5291
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /note="hexamer: AATAAA"
     regulatory      5290..5295
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
                     /note="hexamer: AATGAA"
     polyA_site      5305
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
     polyA_site      5311
                     /gene="Galntl6"
                     /gene_synonym="1700021K10Rik; 4930431L04Rik; A830023L05"
ORIGIN      
        1 actgatagat ctagcatgct ctcgacttcc tcataactta ccattattct atgaaacgat
       61 cgtatttact ccactgcttt atattaatgg aggtcaatag atttaacgat ttcctcagtt
      121 gactcgttta tttctaagcc aatagataat gccgtcgtca tagttttctg ggggaaagta
      181 actgtgcgtt tgttctgcag atggccaact ccctctgaac cctgcagatt ggtgctgagc
      241 acacaacaaa agttttttgc ttcccctcag tttctggtgc ttcccaggaa agaggaaagg
      301 actttggcat taaactcaag aagtagtctg ggagacatct ctaacttttc tccattgtta
      361 tcctttgcaa tgaagaggaa acagaagagg tttctgcaaa tgactttgtt attcaccgtg
      421 gctttaattt tcctgcccaa cattggtctc tggtctttgt acaaggataa acacctggtg
      481 aaatctgcag aacccgcgga gcatcagaca tttccactgg gcctaggaga tgggcaattc
      541 tattcctgga cagatggtct gagaagaaaa gactggcatg actatgagag cattcagaga
      601 gatgctttgc gctcagggaa aggtgaacat ggaaaaccat acccacttac tgaagaggac
      661 cgggatgact cagcttacag ggaaaatggc ttcaacattt ttgtcagcaa caatattgct
      721 ctagagaggt ctctgccaga catccgccat gccaactgta agcacaagat gtaccttgaa
      781 aggctgccaa acaccagcat cattatccca tttcacaacg aaggttggac ctcactcttg
      841 cggaccatac acagtataat caaccgaaca ccagagagtc tgatagcaga aatcattcta
      901 gtcgatgact tcagtgatag agaacacttg aaggataaat tagaagatta catggctcgg
      961 ttttccaaag tgagaattgt acgcaccaag aaaagggaag gtctcatccg gacccgactc
     1021 ctgggagctt ccgtggctag aggagaggtg ctgaccttcc tagactccca ctgtgaggtc
     1081 aatgtgaact ggctgccccc gctcctcaac caaattgcac taaaccacaa aaccatcgtg
     1141 tgtcccatga tcgatgtcat tgaccacaat cactttgggt atgaggcaca agctggggat
     1201 gccatgcgag gagccttcga ctgggaaatg tactacaaaa gaatcccgat ccctccagag
     1261 ctgcagaggg ctgaccccag cgaccccttt gagtctccgg ttatggctgg aggtctcttt
     1321 gcagtggatc gaaagtggtt ttgggaactg ggtggctatg acccaggctt ggaaatctgg
     1381 ggaggagagc agtatgaaat ctcttttaag gtttggatgt gtggaggaga aatgtttgac
     1441 gttccgtgtt ctagagtcgg tcatatctac aggaagtatg tcccttataa agttccatct
     1501 gggaccagcc tagcaagaaa cctgaagcgt gtggctgaga cctggatgga tgaatttgct
     1561 gagtacattt accagaggcg gccagagtac aggcacctct ccaccggaga catctctgcc
     1621 cagaaggagt tgcggaagcg actcaagtgc aaagacttca agtggttcat ggctgctgtg
     1681 gcctgggacg tgcctaagta ctaccctccg gtcgagcccc tgcctgcagc gtggggtgag
     1741 attcgaagtg tggcagccaa cttatgtgtg gatagcaagc atggagccac agggaccgag
     1801 ctcaggctgg acgtctgtgt caaggatggc tctgaaagga catggtctca cgaacagctc
     1861 tttactttcg ggtggagaga agatattcga cccggtgagc ctctgcacac ccgaaaattc
     1921 tgcctggatg ccatctcaca cagcagccct gtcaccctct atgactgtca cggcatgaaa
     1981 gggaaccagc tctggggata ccgggaggac agaacattat ttcatcctgt gagcaacagc
     2041 tgtatggatt gcaacccctc agagaagaag attttcatgg ccagatgtga ccctctatct
     2101 gagactcagc aatggatttt tgaacatatc aacatgactg ttttagaaaa aaatagccac
     2161 tatgccatct cctagaaagg caagaagaga gattacctac aggttgtgaa ctgtgttgtt
     2221 gcaggcgtct gggtcaaagg agtcaggaga aacatttcct agatcccagg aagcctggtt
     2281 gaacgatgtg taaaggccat gttgacatag gctgtccagg agacgttcct acatctgaag
     2341 aacttggctg agaacctcac cagctgcttc tgagaaccga gactagcagt tcccttgctg
     2401 gccaagggta aagattactt agggactttc atctcgactg ctgagttaat caatcctagc
     2461 atttctcagg tcaaatcctg cagtagtgag tagctatgaa tggatcctat taaccgggtg
     2521 ggaggggggt ggaaacagag cgcatgactg ctctggcaac ctgaggctac cacaggtcta
     2581 gaactagcca cgcttaaggg gtgagctgta ctctttggtg caattctctg actaagagtg
     2641 ggttaagcag gtttaaccct ttaaagtgct gcagatgatt ttagagtgct cataccattt
     2701 ttctcttttc tttggtcttc tctttaaaca agggtacatg gcgtcgaaca cttacattac
     2761 atgctctcat ccaaaggcca tgctatccgt catggttcat aagagctcat ggtccaccaa
     2821 ttagctgaag ttctaattca gtgaccttag atgaatccag ttaaaaacaa aaacaaacaa
     2881 acaaaaacta tgctacccag ttactccaaa gaaagatttc tcagaagcaa cagaatatca
     2941 caaacactcc cacatacaca cacacacaag ttaggggaaa atttccttag gaaatctatt
     3001 tttacttttc tattattttt aaataaaaat ctgatgtttg tccagtcata atttttatta
     3061 aagaagacag tggagagggt tccatgtaat ttgtttagtc tatcgtaaat aaatcttcac
     3121 tcctagtgat gtagaaatgg cctcattcac tttaattctg tttaatctgg gaactttaaa
     3181 agtggtgtta tttagttttg tttttagttt tttttttttt tttttttttt ttttcaagac
     3241 aaggtttctc tgtgtagccc tgattgtcct ggaactcact ctggagacca ggctggcctc
     3301 gaactcagaa attcacctgc ttctgcctcc caagtgctgg gattaaaggc gtgcaccacc
     3361 acgcccagca tcatggtgtt atttaattat cagttttgaa gccccctcca tgttattgaa
     3421 aataaaggta ttgttgtttt attcagaagc ctagaaaagg aactaccatt aataaagcat
     3481 ctctgatgtc attttctgct aatggacaat aatatttcag gggtatgagg aaaaaaatga
     3541 agtaacttga aaactaacta aattggatat ttaatccttt aaacaatttt tcccttttca
     3601 atgatgatgg agtggagaga agaagtgcag gagtgaagat tggtctcgag agggggaatc
     3661 atttgatata catgctccat ctgttttgag tacaggtcat tcctatactg ctttttctat
     3721 ttttttgatg tagtttcctt gttaataaaa agatatacat ctaacatttt ggacatagat
     3781 cactgaagtt caggacagga agatacacaa gagtctgtcc tttttgttgt tgttgtttaa
     3841 atattttgtt tctcttggag ttgtttttaa aataaataag aaaagcccag agaggcccag
     3901 cttctggtgg ggtttttcac ctggacacct cactcagtgg aaaagaatcc tgtacttctc
     3961 tcaaaatgcc cagtcattca gaaacctaat atatatgcta tatcttcttg aaaatgtgca
     4021 ctattatttt ctgtcctcta atcaaatatg cagttaaact accctgctaa gaattgggga
     4081 aggattactt cagtatcttt actgatattt tttcaagcat tcttctgaca agctcttctt
     4141 tttaaacgga ttgtcactga gatcttttgt atatgtcaag tgatctcgaa acagcgaaga
     4201 tgcatagtgg agaaaatcaa tagtgagaaa ttatcctatg tgctgaacat gtctaaggtg
     4261 tgaggaagga tttatctctc aaatgatccg agaccaatct ggctggggac taagatgatt
     4321 ctataaaaat ccacattatg tcattaagca gttgattgcc atttacaatt gtaccaaaga
     4381 cacaatcttg ggttgtgccc cccctccccc gaagcccaga tttgtaatta tctcttagga
     4441 tgctatagtc atggctaact caattggccc tatcgtaagt actgcagcat tttagtgaag
     4501 aacacagtga tcaatcaaga tcggtctctt actctctgaa taaaacatta ttttttaaaa
     4561 atatatatat tatttttttc tttaaacata gaatgaaagc ttggacatta aatccaaaat
     4621 taaaacttcc aactatgagc cagtcattaa ttgtgtgcac acagggaaca tacaaatgta
     4681 gtagagcctg gagagggccc ctaagcaaga gggcagagca ctgcccatta aagcacactg
     4741 gaagagatgc ttcctatacc actgaaggtc aagcgcttac ttgcttgaaa tactatctga
     4801 aaagcaagca taaaactata taggtttgcc ctttgaatta gcaagaagga tagaagagtc
     4861 ctcagaaaga ctattgctcc tggaagtaac atcctttgag aagtccatgg tcgagtgccc
     4921 atagattctt ttcctaaaat gagggatggt aaaaagttaa tgtatcgcag aagttgctac
     4981 ttctccatga tgagaaatag ctctgacaga agtaaaacaa taattaattt taaagaccct
     5041 tttatgtttt tactggggga aaatatgctg taaaacaatt gggaactaag tgtgtggttc
     5101 atactttttc aagattggat gagtaccttg gcaataatga tatactggct tctgtgtcta
     5161 cttttattta catatatgaa tagaatcact tgactgtttt taaatgtatt cattctatca
     5221 gaagcctccg tgaataacgc aagctccagg actattttgt gaattgataa catagaactt
     5281 tatacaataa atgaataaca catgatgcaa a
//
