LOCUS       NM_198306               2891 bp    mRNA    linear   ROD 16-OCT-2021
DEFINITION  Mus musculus polypeptide N-acetylgalactosaminyltransferase 9
            (Galnt9), transcript variant A, mRNA.
ACCESSION   NM_198306 XM_132253
VERSION     NM_198306.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2891)
  AUTHORS   Peluso G, Tian E, Abusleme L, Munemasa T, Mukaibo T and Ten Hagen
            KG.
  TITLE     Loss of the disease-associated glycosyltransferase Galnt3 alters
            Muc10 glycosylation and the composition of the oral microbiome
  JOURNAL   J Biol Chem 295 (5), 1411-1425 (2020)
   PUBMED   31882545
REFERENCE   2  (bases 1 to 2891)
  AUTHORS   Molyneaux BJ, Goff LA, Brettler AC, Chen HH, Hrvatin S, Rinn JL and
            Arlotta P.
  TITLE     DeCoN: genome-wide analysis of in vivo transcriptional dynamics
            during pyramidal neuron fate selection in neocortex
  JOURNAL   Neuron 85 (2), 275-288 (2015)
   PUBMED   25556833
  REMARK    Erratum:[Neuron. 2016 Jan 6;89(1):235]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK032568.1, AI842609.1 and BB428674.1.
            
            [WARNING] On May 3, 2023 this sequence was replaced by NM_198306.4.
            
            On Nov 6, 2013 this sequence version replaced NM_198306.2.
            
            Transcript Variant: This variant (A) represents the longest
            transcript and encodes the longer isoform (A).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK032568.1, SRR1660811.231733.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-645               AK032568.1         2-646
            646-990             AK032568.1         648-992
            991-2883            AK032568.1         994-2886
            2884-2890           AI842609.1         17-23               c
            2891-2891           BB428674.1         241-241
FEATURES             Location/Qualifiers
     source          1..2891
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5"
     gene            1..2891
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /note="polypeptide N-acetylgalactosaminyltransferase 9"
                     /db_xref="GeneID:231605"
                     /db_xref="MGI:MGI:2677965"
     exon            1..588
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /inference="alignment:Splign:2.1.0"
     CDS             348..2162
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /EC_number="2.4.1.41"
                     /note="isoform A is encoded by transcript variant A;
                     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase 9"
                     /codon_start=1
                     /product="polypeptide N-acetylgalactosaminyltransferase 9
                     isoform A"
                     /protein_id="NP_938048.2"
                     /db_xref="CCDS:CCDS51610.1"
                     /db_xref="GeneID:231605"
                     /db_xref="MGI:MGI:2677965"
                     /translation="MAVARKIKTLLTVNILVFVGIILFSVYCRLQDRSEALVQVVRGT
                     DRRMRNRLSKASALADREAILQRLDHLEEVVYNQLNGLAKPIGLVEGPGGLGQGGVAA
                     TLQDDSQETEGKFEDFGYNAQLSDRISLDRTIPDYRPKRCRQITYSEDLPQISVVFIF
                     VNEALSVILRSVHSVVNHTPSQLLKEVILVDDNSDNVELKFNLDQYVHKRYPGLVKVV
                     RNSRREGLIRARLQGWKVATAPIVGFFDAHVEFNTGWAEPALARIQEDRRRIILPAID
                     NIKYSTFEVQQYASAAHGYNWGLWCMYIIPPQDWLDRGDESAPIRTPAMIGCSFVVDR
                     EYFGDIGLLDPGMEVYGAENIELGMRVWQCGGSMEVLPCSRVAHIERTKKPYNNDIDY
                     YAKRNALRAAEVWMDDFKSHVYMAWNIPMTNPGVDFGDVSERLALREKLKCRSFKWYL
                     ENVYPEMRIYNNTLTYGEVRNSKASGYCLDQGAEDDDRAILYPCHGMSSQLVRYSAEG
                     LLQLGPLGSTAFLPDSKCLVDDGRGRMPTLKKCEDVARPTQRLWDFTQSGPIVSRDTG
                     RCLEVEMSKDANFGLRLVVQRCSGQKWMIRNWIKHARH"
     exon            589..769
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /inference="alignment:Splign:2.1.0"
     exon            770..936
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1111
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /inference="alignment:Splign:2.1.0"
     exon            1112..1309
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1427
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /inference="alignment:Splign:2.1.0"
     exon            1428..1613
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /inference="alignment:Splign:2.1.0"
     exon            1614..1751
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /inference="alignment:Splign:2.1.0"
     exon            1752..1847
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /inference="alignment:Splign:2.1.0"
     exon            1848..2015
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /inference="alignment:Splign:2.1.0"
     exon            2016..2891
                     /gene="Galnt9"
                     /gene_synonym="GalNAc-T9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgagcgca caggagcggg gcgcgcagga gcgatcgggg cgcgcaggag cgggacgcag
       61 cagctaaggc ctcgcgctgc ctcccggccc aggaagctcc cggcgggcgg gccctgctga
      121 ctatgcgggc ggcgccctgt acccgcatcc ccggacggtt tctgcgcgct gaagaagggc
      181 gggtcgcggc ggcctggctc gtggagcccg cgcggtggtg ctgaaagaac agctcccgcc
      241 cttgcccagc ccatggtccc caccgcggcc ggccgctccc aggctcctgc ggccccgggg
      301 ccccggggat gcccggcggg tgaggcggcc ccgtccgagc cgcgctcatg gcggtggcca
      361 ggaagatcaa aactttgctg acggtcaaca tcctggtgtt cgtgggcatc attctcttct
      421 cggtgtactg ccgcctgcag gaccgttctg aggcgctggt gcaggtcgtg cgaggcaccg
      481 accgccggat gcgcaatcgg ctatccaagg cgagtgctct ggccgaccgt gaggccatcc
      541 tacagcgcct ggaccatctg gaggaggtgg tctacaacca gctgaatggc cttgcaaagc
      601 ccattgggct ggtggagggg ccaggtggcc tgggccaggg aggagtggct gccactctgc
      661 aagatgacag ccaagagacc gagggcaagt tcgaggactt tgggtacaat gcgcagctca
      721 gtgaccgcat ctccctggat aggaccatcc ctgactacag gcccaagagg tgcagacaga
      781 taacgtattc tgaagacctg ccccagatct ccgtggtctt catctttgtc aacgaggcac
      841 tttcagtcat ccttcgttct gtgcacagtg tggtcaacca cacaccctcc cagctcctga
      901 aggaagtcat cctggtggat gataacagcg acaacgtgga actcaagttc aatctggacc
      961 agtatgttca caaaaggtac ccaggcctcg tgaaggttgt gcgcaacagc cgtcgggaag
     1021 gtctgatccg tgcccggctg cagggatgga aggtggccac ggctcccatc gttggcttct
     1081 ttgatgccca cgtggagttc aacactggct gggctgagcc cgccctcgca cggatccagg
     1141 aggaccgccg gcgcatcatc ctgccagcca tcgacaacat caagtacagc acgtttgagg
     1201 tacagcagta cgccagcgcc gcccacggct acaactgggg cctgtggtgc atgtatatca
     1261 tccctccgca ggactggctg gaccgaggtg acgagtcagc gcccatcagg acacctgcca
     1321 tgattggctg ctcatttgtg gtggaccggg agtacttcgg ggacattggc ctgctggacc
     1381 caggcatgga ggtgtacggt gcagagaaca ttgaactagg gatgcgggtg tggcagtgtg
     1441 gtggcagcat ggaggtactc ccctgctccc gcgtggccca cattgagcgt accaaaaagc
     1501 catataacaa cgacatcgac tactacgcca aacgtaatgc actaagggcg gccgaggtgt
     1561 ggatggacga cttcaagtcc cacgtgtaca tggcatggaa tatccccatg acaaacccag
     1621 gagtagactt tggggatgta tccgagaggc tggccctgcg cgagaagtta aaatgccgaa
     1681 gctttaagtg gtacctggag aacgtgtacc ccgagatgag gatctacaac aacaccctca
     1741 cgtacggaga ggtgagaaac agcaaagcta gcggctactg cttggaccag ggggcagaag
     1801 acgatgaccg agccatcctc tacccctgtc atggcatgtc ctcacagctg gtgcgctaca
     1861 gtgccgaagg tctcctgcag ctgggacccc tgggctctac cgcctttctg cccgactcca
     1921 agtgtctggt agatgacggc cggggacgca tgcccaccct gaagaagtgt gaggatgtag
     1981 ccaggcctac gcagaggcta tgggacttca cccagagcgg ccccatcgtg agccgagaca
     2041 cgggtcggtg tctggaggta gagatgtcta aagatgccaa ctttgggctg cggttagtag
     2101 tacagcgctg ctcggggcag aagtggatga tccgaaactg gatcaaacac gccaggcact
     2161 gacctctgcc ctcagcccac ctccacacat tggggctctt ggactcgtga atgttctggg
     2221 actcagaagg tcctggggtg gagccaagat gggaacttct tgcccacccc acagacccaa
     2281 gagcaatgtg ggccctgcac accccagggc taggttttgt gaccagggat cgcagagacc
     2341 ttggaatagc cgctccagcc tgcattagga accaaacttt tgtggaacag gcagctctgc
     2401 ccgagggagg acatctgagg acggcgcaca ctcatgccaa atcacgtgcc ttttctacag
     2461 tgttccccca accggctatg aggatagccg ccacgcatgt gctaagtccc tgtacataac
     2521 ccatatggaa acaaacagac tcagctattc agtgctgagg gcaggtgcat cctcacacca
     2581 agcaccgtgt cctagcaggt ccgagcctct ccgctcagct gccctggctc gcctgctcaa
     2641 cctcaccgta acttaaggcg atcttcaagg gtgaccgctt gtgttctggt aacaggcaat
     2701 gggaagagat caccgggatg agactctgtg cacttttctt cccaagggtc agctaggcac
     2761 tcactgggca cgggtctcag cctgggaaac gagtctcttg ttgctctgtc atttctacag
     2821 caagcatcat caaatgaccc ctccagcccc tcacttgttt tataaataaa gttttattgg
     2881 cacacagcca t
//
