LOCUS       XM_017314960            4928 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus galactosylceramidase (Galc), transcript
            variant X1, mRNA.
ACCESSION   XM_017314960
VERSION     XM_017314960.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017314960.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4928
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..4928
                     /gene="Galc"
                     /gene_synonym="2310068B06Rik; A930008M05Rik; Gacy; twi;
                     twitcher"
                     /note="galactosylceramidase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     mRNAs, 10 ESTs, 558 long SRA reads, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 30 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:14420"
                     /db_xref="MGI:MGI:95636"
     CDS             1565..3271
                     /gene="Galc"
                     /gene_synonym="2310068B06Rik; A930008M05Rik; Gacy; twi;
                     twitcher"
                     /codon_start=1
                     /product="galactocerebrosidase isoform X1"
                     /protein_id="XP_017170449.1"
                     /db_xref="GeneID:14420"
                     /db_xref="MGI:MGI:95636"
                     /translation="MHYELDENYFRGYEWWLMKEAKKRNPDIILMGLPWSFPGWLGKG
                     FSWPYVNLQLTAYYVVRWILGAKHYHDLDIDYIGIWNERPFDANYIKELRKMLDYQGL
                     QRVRIIASDNLWEPISSSLLLDQELWKVVDVIGAHYPGTYTVWNAKMSGKKLWSSEDF
                     STINSNVGAGCWSRILNQNYINGNMTSTIAWNLVASYYEELPYGRSGLMTAQEPWSGH
                     YVVASPIWVSAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNLTIIIETMSHQHS
                     MCIRPYLPYYNVSHQLATFTLKGSLREIQELQVWYTKLGTPQQRLHFKQLDTLWLLDG
                     SGSFTLELEEDEIFTLTTLTTGRKGSYPPPPSSKPFPTNYKDDFNVEYPLFSEAPNFA
                     DQTGVFEYYMNNEDREHRFTLRQVLNQRPITWAADASSTISVIGDHHWTNMTVQCDVY
                     IETPRSGGVFIAGRVNKGGILIRSATGVFFWIFANGSYRVTADLGGWITYASGHADVT
                     AKRWYTLTLGIKGYFAFGMLNGTILWKNVRVKYPGHGWAAIGTHTFEFAQFDNFRVEA
                     AR"
ORIGIN      
        1 tgcggcgcag ggaccgcagg gaccgcaggg accgccgggg ccgccccctc ccacaagccc
       61 ccgcggcgtt gccgggcgag cgcacgccgc ttccccgcgc gccggggtga gatgaacccg
      121 ggctggcggt tagattgcaa tggggagcca ggcgtctcga ggggacaggc gtctgctgca
      181 gtcaagtggc ccgggctcga gggagccctc gttctggatc gccggccagg gctgtccttg
      241 ccgcgctgga agggtcgcct ccggaaaaag ccagagaggg actgcgaagc ctcagcgaga
      301 tgctttgggg aggggggggg gtgggttctc ttccttccca gggagttagt tggtggagcc
      361 gtgagtcaga agacataggc agggtttggg gacccttctt gaacagtgat tagcaccccg
      421 tccctccctg taagacctct tggactcttt agagttgtgt aaagcctgaa gcgatctggg
      481 atattgtttt aaaagagggc caccttcatc cactaacaga aactgtggcg tgtctgtgtt
      541 ggaacgaggg aatgctggct ctgttagggc acataagaat cattaggtgc attggttaaa
      601 atttaagttg tcttcctctc ccattctgac tttgttaata aacaccagct aattctcaaa
      661 agatgaggtc ttgagagtga tttcttgttg actcaaagat ctcaggactg ggaagtgggt
      721 ttgcttttaa attgaaatct taagagtagt tttagatcta ccgaaaagct aggagtgcag
      781 taaaaagttc tataccccag tgtgtgtgtg tgtaataatg aactaatcta ttctcagttt
      841 atttaaattt aaaatagcca atatttctta tacaacctta acgtctcctt ttggtatctt
      901 tgtgatagta aatctaagtg taaaggcttt tttaaaaaaa tgagatttcc agttttgctt
      961 aatttactca acttttaatt attaaaataa tttcataacc tggtgtgatg tagtaagcct
     1021 tagtgtgtgt gtgtgtgtgt gtgtgttggg aatgtttgta catgtgagta ctggtgctta
     1081 cagaggccag aagcacgtga gttgccatct ctccagcctc cagagcaggt aaatctatta
     1141 aatagtcagt tagtaatgtc tctatactat gttatgtatt agtcagttta ggaaaatagt
     1201 aaatgaagat ggatgaccat tttatttaca caccagttta aacttgtgtg tgtacaacat
     1261 gttacctagc acagttgtag cagcacttag attgccctct cttgactttc acatatttag
     1321 ggaaagcatt ttgcttcagt ggttggcatg tgggcttccg aggttgctgg aatcattctg
     1381 gcacaggaca ctcacctcct ggttttgaca agcaacctcc cggcttctag taaattaccc
     1441 agagccctat cgttctgaaa tactggatta tctatttaag ccaaactttg gtgcctcttt
     1501 gcatattcta aaagtggaga taggtggtga tggacaaaca acagatggca ctgaaccctc
     1561 gcacatgcac tatgagctag atgagaatta tttccgaggc tatgagtggt ggctaatgaa
     1621 ggaagctaag aagcggaacc cagatattat acttatgggg ttgccatggt cattccctgg
     1681 atggctgggc aaaggcttca gctggcctta tgtaaatctt cagctcactg cctactatgt
     1741 tgtaagatgg attttgggtg ccaagcatta tcatgacctg gacattgatt atattgggat
     1801 ttggaatgaa aggccgtttg acgccaacta tataaaggaa ttaagaaaaa tgctggatta
     1861 tcaaggtctc cagcgagtga gaatcatagc gagcgataat ctctgggagc cgatttcctc
     1921 ttccttgctg ctggaccagg aactctggaa ggtggttgat gttataggag ctcactatcc
     1981 tggaacctac acagtgtgga atgcaaagat gtcagggaag aagctgtggt catctgaaga
     2041 ttttagcact atcaacagta atgttggcgc aggctgttgg agtcgcatat tgaaccagaa
     2101 ttacatcaat ggcaatatga cctccacaat tgcttggaat ttggtggcta gttactatga
     2161 agagttgcct tatggacgaa gtgggttgat gacggcccag gagccatgga gtggacatta
     2221 tgtcgtagca tctcctatct gggtatcagc tcacacaacc cagtttactc aaccaggctg
     2281 gtattacctg aagacagtgg gccatctaga gaaaggagga agttatgttg ctctgactga
     2341 tggcttggga aacctcacca tcatcattga aactatgagt catcaacatt ctatgtgtat
     2401 acggccatat ctgccatatt ataatgtctc acatcagctg gctaccttca ctctaaaggg
     2461 atctttgaga gaaatacaag agctgcaggt gtggtatacc aagctgggaa ctccgcagca
     2521 gagacttcat tttaaacaac tggatactct atggctcctt gacggcagcg gcagtttcac
     2581 actggaactg gaggaggacg agatatttac gctcaccact ctgaccacag gtcgcaaagg
     2641 cagctaccct ccccctccca gctcgaagcc cttcccaacc aactacaagg atgatttcaa
     2701 tgttgagtac ccacttttta gtgaagctcc gaattttgct gatcagactg gcgtgtttga
     2761 gtactacatg aataatgaag accgtgagca ccgcttcacg ctgcgccaag ttctcaacca
     2821 acgacctatt acctgggctg cagacgcttc cagcacaatc agtgttatag gcgatcacca
     2881 ctggaccaac atgactgtgc agtgcgatgt ttatatagag acccctcgga gcggcggcgt
     2941 attcattgct ggaagagtga ataaaggtgg aatcttgatt agaagtgcta caggagtctt
     3001 tttctggatt tttgcaaatg gctcttacag agtcacagct gacctgggtg gatggataac
     3061 gtatgcttca ggacatgcgg acgttacagc taaacgatgg tacacactca ccttaggcat
     3121 taagggttat ttcgcctttg gtatgttgaa cggcacgatc ctatggaaaa acgtccgtgt
     3181 gaaataccca gggcatggct gggctgcgat cggaacacac accttcgagt ttgcgcagtt
     3241 tgacaacttt cgcgtggaag ctgctcgcta gtccacacgg ggcgtcaaga catgatttgg
     3301 attttctatt tttgattttg gttcagggcg aattctgatt ttgatggatc tatatatgag
     3361 cctttgaggc taacgataat gaggagtaaa taggggacat ggtgcatttt tgctggatcc
     3421 tgtgaaaggt ttatttagag ccgattccag aggggatgca ggtagtcttt gacactctct
     3481 gtggtagctc tcaaggccca cggttgttca gtcccatcct tcaggggtgc ttgggcgggt
     3541 tctgcccttg cagccttcgc actaatacca aggtagctca ttccacattg tttgtaaatg
     3601 atcgtgcagg caactggggc cacagaggag cttttgtgag cctagccaca cgcctcagtc
     3661 aaggcttcct tagaagatgg tgatgctcaa ggggaaactg atgagcacta cagcgagtac
     3721 ttcactgtgc agtcgtctct ccctctccct ccatctcccc tcccctcacc catgccctcc
     3781 cccccccccc caggatgata cttttggagt tgtgtgagat gatggtggga tgatttgaca
     3841 attacctcat taataaacta acactgaagc catttctgca gtaataaaaa acaaccagat
     3901 taactgggtt gtttgtactt tttaacgatc ttacatccaa cttttagatg ttatcaccct
     3961 tataaccgcc ttgagcacat ttcccccata taagctggtg ccgtaggcga atctaactgc
     4021 ttccctgttc atttcttgtg ccttttgcag tgagtcctca caaggggctc tgaacgcagc
     4081 ccagcaccgg tgaatgcctt catctgtcaa tgtgtggcag gagggaccgc cgagggttta
     4141 actagctcac agatttggat catctcctga tgtttttgga tagatgcact taatatattc
     4201 ccagggttta gatttaaatg ttgctaagca tgtttctcat tagtatgatt tatgtaacat
     4261 taatgtaact cttagaaaca gaccagttct ccatgtgggt aaagtgaact ctggaattct
     4321 ttataaggaa aacttactca ttgacataac gctgctccat gggaattggt agtgctccag
     4381 cgaggcagaa gtacagtgag gtctgtatta cttccgaaaa cttgaaacca aggctaaatg
     4441 atttactgtt tagattttaa attatttttg aaaaataaca tacaagtgta atttatatgt
     4501 cttaaaatat tctcatttta agtgtctagt ttgttttaat aattttgtaa acattccctg
     4561 taacccacac tccaatgaag ctactgaata tttgcatcac tccagaaagt tctctgctat
     4621 acctgtgcaa tccattccgc tcactcctaa tttcaagcaa cagtgatgtc tctgttgcca
     4681 aaatattgtt tgttttgaaa gcatggaagt gacaggatgc gctgtggact cttctggatg
     4741 tgtgttttcc gtcagcggga tgctgtaaga tttgtccagt gtgtaaggtt ttgccaaagt
     4801 ggtacactgc tccttatttc tgaagggagc agcattgaat ggatgcacca ccattggttt
     4861 tccatctcct atttttatga gatgaaaaat aaaagtcatc acagcactaa catacaaatc
     4921 tttgagaa
//
