LOCUS       NM_001039219            4063 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus galactose-3-O-sulfotransferase 2C (Gal3st2c), mRNA.
ACCESSION   NM_001039219 XM_925765
VERSION     NM_001039219.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4063)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 4063)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   3  (bases 1 to 4063)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   4  (bases 1 to 4063)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   5  (bases 1 to 4063)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   6  (bases 1 to 4063)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   7  (bases 1 to 4063)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   8  (bases 1 to 4063)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ080564.1, AK145447.1 and AC167963.5.
            
            On Sep 8, 2017 this sequence version replaced NM_001039219.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK145447.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4                 CJ080564.1         2-5
            5-3387              AK145447.1         2-3384
            3388-3388           AC167963.5         98067-98067
            3389-4063           AK145447.1         3386-4060
FEATURES             Location/Qualifiers
     source          1..4063
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 47.45 cM"
     gene            1..4063
                     /gene="Gal3st2c"
                     /gene_synonym="EG619597; Gm219; Gm6086"
                     /note="galactose-3-O-sulfotransferase 2C"
                     /db_xref="GeneID:619597"
                     /db_xref="MGI:MGI:3646771"
     exon            1..178
                     /gene="Gal3st2c"
                     /gene_synonym="EG619597; Gm219; Gm6086"
                     /inference="alignment:Splign:2.1.0"
     exon            179..497
                     /gene="Gal3st2c"
                     /gene_synonym="EG619597; Gm219; Gm6086"
                     /inference="alignment:Splign:2.1.0"
     exon            498..641
                     /gene="Gal3st2c"
                     /gene_synonym="EG619597; Gm219; Gm6086"
                     /inference="alignment:Splign:2.1.0"
     exon            642..792
                     /gene="Gal3st2c"
                     /gene_synonym="EG619597; Gm219; Gm6086"
                     /inference="alignment:Splign:2.1.0"
     exon            793..884
                     /gene="Gal3st2c"
                     /gene_synonym="EG619597; Gm219; Gm6086"
                     /inference="alignment:Splign:2.1.0"
     CDS             859..2049
                     /gene="Gal3st2c"
                     /gene_synonym="EG619597; Gm219; Gm6086"
                     /codon_start=1
                     /product="galactose-3-O-sulfotransferase 2C"
                     /protein_id="NP_001034308.1"
                     /db_xref="CCDS:CCDS48330.1"
                     /db_xref="GeneID:619597"
                     /db_xref="MGI:MGI:3646771"
                     /translation="MSILRGTQRSFQVALWFLVLAVFLLVVFLHVDFRLLIPDKVQEP
                     PVTNIMFLKTHKTASSTILNILYRFSESHNLSTALPEGSRVHLGYPWLFVTRYVEGLK
                     QDAHLQHHFNIMCNHLRFNYPEVQKVMPRDTFYFSILRNPVFQLESSFIYYKDYAPAF
                     QRAKSLDEFLADPWKYYKASVSLENVYAKNNMWFDFGFDNNAPADKDYVRKCLAEVEQ
                     RFHLVLIADYFDESMVLLRRRLRWQLDDVVSFKLNVRSQSTVSHLTPESQERVQHWCA
                     LDWQLYQHFNRTFWTQLHAELSPRQLTEEVEQLRERQRELMALCLQDPEPKNLTHIDD
                     RNLRPYQSGKAKILGYKLRHGLDTTTLHICQRMAMPELQHMAHMYSLQFPDKTPKDIP
                     FLKK"
     exon            885..971
                     /gene="Gal3st2c"
                     /gene_synonym="EG619597; Gm219; Gm6086"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1230
                     /gene="Gal3st2c"
                     /gene_synonym="EG619597; Gm219; Gm6086"
                     /inference="alignment:Splign:2.1.0"
     exon            1231..4063
                     /gene="Gal3st2c"
                     /gene_synonym="EG619597; Gm219; Gm6086"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atatgactta gctgcagtcc ctggcgcctt tgggactgcc gccacacccg ctccccacag
       61 gttctcattg aaccctgagc taaaaggggt gcataagagg gatcccctgg actggagccc
      121 tccctactgc aggtcactcc agcctggccc ctggctgccc ttgccttctg cttaacagat
      181 ttttttttag gggaaggcac agaagatcca ctctgaccct gtgtgtctct gaacatgtgg
      241 agcctgggca ggaggatctg tgagagtctc tcatgaagag aagcagccct tcccatgttc
      301 tgagtggaat gtgggggagg tgagccacag ggtggagaac agcctggtac tgcttatcca
      361 tcagatcacc tactgttagc ctggagagct acttggcaga ccccttgcac ttcctctaag
      421 ttctgagatg cgcgctggcc ttagggaatc atgcccagca cctgacccca gtgaagaaag
      481 ttgttgaaag gactgagcaa tggaacagta actaagacag catctctgga gcctgtgtcg
      541 accttgccat ctgggtggtg agagactcca gggtactgtc ctccaacaag cagccgaccc
      601 tggcttacag ccaccttcat accactggcc aaagcaaaga ggtccatctg gagccactcc
      661 ctccaagacc tctctgagag ggcttacatg gacggtgagg agaaagaaag tctgacttga
      721 ccaaggaaat cttcatggct cagacattcc agctgtcagg gctctgccca cctggtgata
      781 taggaagggg agtcaaggaa gtggaaggtc ttgactggca cttccctgtc catctcctgg
      841 cggctctgag gcaggataat gtccatcctg agaggcacac agaggtcctt ccaggtggca
      901 ctctggttcc tggtcctggc cgtgttcctg ctggttgttt tcctgcatgt ggacttcaga
      961 ctacttatac cggacaaggt ccaggaacca ccggtcacaa acatcatgtt cctcaaaacg
     1021 cacaagacag ccagcagtac aatcctcaac atcctctacc gcttctcaga gtctcacaac
     1081 ctatccacag cgctgcccga gggctctaga gtccatctgg gttacccctg gctttttgtg
     1141 acacggtatg tggagggcct gaagcaggat gcccacctgc agcatcactt taacatcatg
     1201 tgcaaccacc ttcggttcaa ctatcctgag gtgcagaaag tcatgcccag ggacactttc
     1261 tacttctcca tcctccggaa cccagttttc cagctggagt cctccttcat ctactataag
     1321 gactatgcac ctgccttcca gagagccaag agcctggacg aattcctggc agatccgtgg
     1381 aagtactaca aagctagtgt gagcctggaa aatgtctatg cgaaaaacaa catgtggttt
     1441 gattttggct ttgacaacaa cgccccagca gacaaggact atgttcgcaa atgccttgcg
     1501 gaggtggagc agcgattcca tctggtgctc attgcagact acttcgatga gtctatggtg
     1561 ctgctgcgca gaaggctgcg ctggcagctg gatgatgtcg tgtccttcaa gctgaacgtg
     1621 cgcagccaga gcactgtctc ccacctgacg cctgagagcc aggagcgtgt ccagcactgg
     1681 tgtgcgctgg actggcagct ctaccagcat ttcaatcgca cgttttggac ccagctgcat
     1741 gcggagctaa gcccacgcca gctcacagaa gaggtggagc agctgcggga gaggcagcgc
     1801 gagctcatgg ccctgtgtct tcaggatcca gagcccaaga acctgacaca catagatgac
     1861 cgaaatctgc gcccttacca gagtggaaag gctaaaattc tgggctacaa acttaggcat
     1921 ggtctggaca ccaccacact gcatatctgt cagagaatgg cgatgcccga gctccagcac
     1981 atggcccata tgtactctct gcagtttccc gacaagactc ccaaggatat cccattcctg
     2041 aaaaagtagg gtttggctaa gtgaccctct cttcccagcc tacctttcca aagtgaaact
     2101 gtgaagatgc ccatccgtct ccatctctgg ggagagggcc ttccacctaa gacaacacgc
     2161 acagctgttc catatctgaa tccacccact gtagagacat ggacaggcaa gaatgcttgt
     2221 gcccttaaat tatttcacag agacagtcta agcagcccac caggtgaaca tcagcccagg
     2281 ggaaacaccg gagcatagac atcgggcctg tggatccaag aagagaccta gaatggttcc
     2341 ctgggatttt gtagccacat tggttcagca ccggtgacaa tgccatgctt gtacagggtt
     2401 cggaggctca gacgtgggcc agggagtgac gggatgagta ggcagcctta cattttacga
     2461 agaacagtgc agactgagag ttgtgaacgt tgttggttag cctgagcaca cacacagtct
     2521 actttttagc ttcctgttga acagtcctga aggagaaagt gcctgacttg ccacaggttc
     2581 tctgagaggc tcaggtacct ttggttgcct tggaaaccat gttgtgtata atctcaggga
     2641 tcatcttttg ggtgcctctc ttagtcatac atggagagat actaagtatc tagcacccag
     2701 ctctcaggat gaggtacctg attccctggg gtactcaaat agggtgcctg aggtgttggg
     2761 aaaagaagcc actctcacat actcagccca gactgtctgc ctgagccttg cttgttgagt
     2821 tttggtggag gcttttcttc tgtgtccaag gccacagaaa agacatccta tgctcctttg
     2881 gacatcaatt taatatgaaa agtattgtta aagaaaaaag taactttttg taattttaga
     2941 gagagtacaa tgagtttgtc aacacaaaag aacactgtaa attgagaatt ggctctccca
     3001 aactgaacag aggtattcag aatgccaggg atgctggctc agacctttaa tcctggcatt
     3061 ggggaggtag aggcaaacag atctctgact tcaaggccag cctgaactac atagtgagtt
     3121 ccaggacaac caggctacaa agtatgaccc tgtctcaaaa caagacaaaa aaccacaaac
     3181 aaagctaaaa gaccaatcaa acaaaaatac aaattactga atttagacca aaatgctctt
     3241 aataaacttg agtcctctgg aagagaagtg aaagaaaaag accccgaaca ccatgttctc
     3301 agaccaagtt ctcagcatga aggagattta tttgccctag aggaacagag gatatggata
     3361 atggacaaag atgggagggt taggggtatc tgtcccagag tgggacagag gactgcctct
     3421 ggatagagag aagacagatg tggcccatag gaaaatggca gttaggatta aagggaaacc
     3481 ctgtgttagg atgaggtgtt taattttaat tgagcatgtt aattaggcga accaaagggg
     3541 gcttttgatt gctggacttc aatgctttga tagttggacc ttggtagtta gcctcaggag
     3601 gaggaagtgg acaaatgacc ttggtggcta gctttaagtg tgttagcagg gccgagagga
     3661 tgcaggagga gatcaaggcc tgccatagct gtgctcgcct tgctggagct ggccagagtc
     3721 ccatcatgaa gaagttttct tacctctgag ccatgtctcc agctccttag ttagaacttt
     3781 tcattcttag tatccttaat ttttttcttt ttctttttgt cagttctggg ggttgaaccc
     3841 aggacctcaa gtgtgctagg caagtgacct gacactgagc cgtgacccca accttcctga
     3901 aaccttcatt tctagggaag actcaggaac aaagaaagat ccagttgtca cacacaatca
     3961 cacaggtcaa ttaaattgtc tctgtctttc acccatatac actgaacact tgacattgcc
     4021 tcatataatt atggtctctc taataggtct tctatgtccc act
//
