LOCUS       NM_001033389            3821 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Mus musculus far upstream element (FUSE) binding protein 3 (Fubp3),
            transcript variant 1, mRNA.
ACCESSION   NM_001033389 XM_130112 XM_619744 XM_917022 XM_924604 XM_924608
            XM_924611 XM_924618 XM_924622 XM_924627
VERSION     NM_001033389.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3821)
  AUTHORS   Yao,Q., Xie,Y., Xu,D., Qu,Z., Wu,J., Zhou,Y., Wei,Y., Xiong,H. and
            Zhang,X.L.
  TITLE     Lnc-EST12, which is negatively regulated by mycobacterial EST12,
            suppresses antimycobacterial innate immunity through its
            interaction with FUBP3
  JOURNAL   Cell Mol Immunol 19 (8), 883-897 (2022)
   PUBMED   35637281
  REMARK    GeneRIF: Lnc-EST12, which is negatively regulated by mycobacterial
            EST12, suppresses antimycobacterial innate immunity through its
            interaction with FUBP3.
REFERENCE   2  (bases 1 to 3821)
  AUTHORS   Zivraj,K.H., Rehbein,M., Olschlager-Schutt,J., Schob,C., Falley,K.,
            Buck,F., Schweizer,M., Schepis,A., Kremmer,E., Richter,D.,
            Kreienkamp,H.J. and Kindler,S.
  TITLE     The RNA-binding protein MARTA2 regulates dendritic targeting of
            MAP2 mRNAs in rat neurons
  JOURNAL   J Neurochem 124 (5), 670-684 (2013)
   PUBMED   23121659
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY311525.1, CD538485.1, AK167671.1, AK039504.1 and BY643667.1.
            
            On Mar 14, 2014 this sequence version replaced NM_001033389.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK145377.1, AK167671.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-74                BY311525.1         2-75
            75-181              CD538485.1         1-107
            182-2889            AK167671.1         2-2709
            2890-3716           AK039504.1         1198-2024
            3717-3816           AK167671.1         3536-3635
            3817-3821           BY643667.1         406-410
FEATURES             Location/Qualifiers
     source          1..3821
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 21.84 cM"
     gene            1..3821
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /note="far upstream element (FUSE) binding protein 3"
                     /db_xref="GeneID:320267"
                     /db_xref="MGI:MGI:2443699"
     exon            1..303
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            304..409
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            410..443
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            444..493
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            494..565
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            566..623
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            624..786
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            787..885
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            886..990
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1093
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1094..1194
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1195..1336
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1337..1497
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1498..1571
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1572..1643
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1644..1720
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1721..1792
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1793..3821
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3780..3785
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /note="hexamer: AATAAA"
     polyA_site      3815
                     /gene="Fubp3"
                     /gene_synonym="A330051M14Rik; FBP3; Marta2"
                     /note="major polyA site"
ORIGIN      
        1 gtgctttgag accccgcctc acagacgctg ctttccccca acctatctct ctctctctct
       61 ctctctctct ctctgtctcc ctctgagcta gcagtgcctt cccttcgctt cccttccgcc
      121 ggaagtgggg cgactttccc tttccggcta cgggtcccgg agcggagtgg gaggccggac
      181 cgggggagcc gagcgacggc ggtggcggtg ggcttggcta tggcggagct ggtgcagggg
      241 cagagcgctc cggtgggcat gaaggctgag ggctttgtgg atgccctgca ccgggtccgg
      301 cagattgctg ctaaaatcga ttcaattcct cacttgaata attccacacc tctggtggac
      361 ccctcagtgt acggatacgg agtacagaag cgggccctgg atgatggagt aggtaaccag
      421 ttaggggcct tggtacatca aagggcagta ataacagaag aattcaaagt gcctgataaa
      481 atggttggat ttattattgg caggggaggt gagcagattt cacgaattca agcagaatct
      541 gggtgcaaaa ttcagattgc ctcagagagt tctgggattc cagagaggcc ctgtgtactt
      601 accggaaccc cagaaagtat tgaacaagcc aaacggctcc tggggcagat cgtggatcga
      661 tgtcggaatg ggcctggctt tcacaacgat atggatggca acagcacaat ccaggaactt
      721 cttatccctg catctaaagt ggggctggtc atcggcaaag gaggggaaac gatcaagcag
      781 ttgcaggagc gaacgggtgt gaaaatggtc atgatccagg atggcccgct gcctacagga
      841 gcagacaagc ctctccgcat cactggagac ccatttaaag tacagcaagc aagagaaatg
      901 gttctagaga ttatccgaga gaaagatcag gctgacttcc ggggtgtgcg cagcgatttc
      961 acctcccgag caggcggagg tagtatagag gtgtctgtgc ctaggtttgt tgttgggatt
     1021 gtcataggaa ggaacggaga aatgattaag aagatccaga acgacgctgg tgtgaggatc
     1081 caattcaaac cagatgacgg gattagtcca gaaagagcag cgcaggtcat gggccctcca
     1141 gatcggtgtc agcatgcagc tcgcatcatc aatgagctca ttctcacggc acaggaaaga
     1201 gagatccttg gtggcctcac agtaacaaga ggaagaggcc gaggccgtag tgactggagt
     1261 gtgggcactc ctgggggcgt ccaggaaatt acgtacacag tgccagctga taagtgcggc
     1321 cttgtgatag gcaaaggggg cgagaacatc aaaagcatca accagcaatc aggtgcccat
     1381 gtggagcttc agcggaaccc ccctcctaac accgacccta acctgcggat atttaccatc
     1441 aggggtgctc ctcagcagat ggaggtggcc aggcatctca tagatgagaa agttggcggt
     1501 gccagcctcg gagcccctgc agccttcgga cagagcccct tcagccagcc accagccgca
     1561 ccacatcaaa acacctttcc tcccaggggc ttccccaaca tcgcagctaa agttaatggg
     1621 aatccccaca gcacccctgt gagtggccct ccagcttttc tgacccaagg ctggggcagc
     1681 acttaccagg cttggcagca gcctacacaa caagtcccaa gccagcagag tcagccacag
     1741 aacagccagc ccgactacag caaggcctgg gaggactatt acaaaaagca gagtcatccc
     1801 accagtgctg ccccacaggc cagctccccc ccagactaca cgatggcctg ggctgagtac
     1861 tacaggcagc aggccgcctt ctatgggcag actttagggc aggctcaggc ccacagccag
     1921 gtctgtagcc agtccccagc gccatgatgc cacgcagcct ttgtgcttgc ctagccccag
     1981 ggtgagcaca gtggcctgtg ggggtctcct ctgtccctcc actccataac tgagcttgag
     2041 cagaggctgc ttctagctct gggcctagaa accctgacta tacctaagtg ccctgggtct
     2101 gcagtgagcc aggaccactc cagcagtagt tcttgcagag agtggccagg ttgggccttt
     2161 acctgcacag cacctttggg gccaagcaag tggagggcca gcttggcctc tttctgtgta
     2221 gaaatgagga gggctctctc ccgttctcag ccaagaagga gctctctttc cttggacctt
     2281 gggggcaagg ctccctccca gggggtacct tttgccttgt aggaagctgg ggttagacct
     2341 ggtgacccag gagaagcctt cccctttcac cccatacccc cacattctga ccctagaacc
     2401 tgaggtgctt agcattcagt acctggtggt atgagactct ggtcttgggc tgaccctctc
     2461 cctcccccca caggagcagt agatgggcat ctgccgcggc tcttccccga aatcagtgtg
     2521 agagaaacct gtttgttaca gagattttta gatttgcaaa ccttttgatg aagacctttg
     2581 ttttgttctg tgaaacacta tatttagatt aacagaaatt ttctaaaaat tgggaaaatt
     2641 agttactaaa cattgctggt aatttttacg tcatgatttc tttgtaaatg tgtgagctcc
     2701 ggggctcttg gagcgaaacc tgcaagctcg ggtgcccaag ctctcctcgg agcctggcat
     2761 ttcatcacac gatggctttg tcttgtgtct ttttagttac agtttggggt gggtttgttg
     2821 ttgttgttgt tgttgttgtt gttgggtttt tggttttggt ttttgttttc cctttttttt
     2881 tttttttttt ctgttacaac agaaaaaatg gcttggaagt cttaggtggt aatgtaacaa
     2941 attctttaaa aatttttgaa gcagtattta aatattcgta aatgtaaatt cattgtgttt
     3001 cacctctaat ttcttgtatc ttggctgtct ggttttattg cattttttaa aaaaaactga
     3061 actattatgt attgtaatta atgatgtgaa ttttgaactg agacgggtcc ttgtgttgcg
     3121 ggagggtcat ttgtgggtta tgtcatttct agcgttttga tggtgatgca gagacgcggt
     3181 ctgccttcgt gtaagctgct cgtctccatt atccagggca gttgtgtgtc taagacctcc
     3241 aagctggttt taaaaacaaa aagcctttct ctattctcag aaatataaat actgttattt
     3301 ttaatattaa aaagaaattc aatataactt ttaacaaaca ctgtggacat taaaccatat
     3361 aaaaaaatgt agtaactatt ttttaattcc agggtgtttt tgcttttttt ccttaaatat
     3421 tttcttaata tttgtcaaat taactagata aataaataaa tctagtatta acaacagtat
     3481 gagttaaata attttgattt aataaaaggg atactatgat ttccaatgtt tactgtagtg
     3541 tatctgtaca gataacatgt atttttaaag gaaacacgga gttgaagcta ttttttcctg
     3601 cattttggat tgacctgagg aacattccgt ttgaaacgtg ctcgttacgg tttgccgttc
     3661 ttgttttcct tatgatgctt gaaatgtcta actattaaaa aggcattgga aatgttatgc
     3721 atgttgtttt ttaaagatgt tctttttatt tgactgacaa ttcattttac actctatata
     3781 ataaaatttc cacaagatgt cttgtgggca aagtgttctt a
//
