LOCUS       XM_036158980            5664 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus FERM and PDZ domain containing 2 (Frmpd2),
            transcript variant X1, mRNA.
ACCESSION   XM_036158980
VERSION     XM_036158980.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 11, 2025 this sequence was replaced by
            NM_001436236.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5664
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..5664
                     /gene="Frmpd2"
                     /note="FERM and PDZ domain containing 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 29 long SRA reads, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:268729"
                     /db_xref="MGI:MGI:2685472"
     CDS             500..4651
                     /gene="Frmpd2"
                     /codon_start=1
                     /product="FERM and PDZ domain-containing protein 2 isoform
                     X1"
                     /protein_id="XP_036014873.1"
                     /db_xref="GeneID:268729"
                     /db_xref="MGI:MGI:2685472"
                     /translation="MSVASVTLASALQVRGEALSEEEIWSLLSLAAERLLEDLRNDSS
                     DYVVCPWSLLLSAAGGLSFQDHVSHIEAAPFKAPELLQGSNEEGQPDASQMHVYSLGM
                     TLYWSAGFRVPPNQPLQLQEPVHSLLLAMCEDQPRRRQPLQAVLEACRIHQEEVAVYP
                     APASLHISRLVGLVLGTISEVERRVVEENACEQRNRSCSLRSRLHQADGESPGAPASD
                     ALQPRRVSERSAETQSSLERCTAHSRNSFVNSTFAGAGPCDCEESPWYGSEPMLLAEA
                     ESSQPATSSPRNFLQRKGKFSRPEFILLAGEAPVTLHLPGSIVTKKGKSYLALRDLCV
                     VLLNGRCLEVKCDMESTAGAVFNAVMSFANLEETTYFGLAYVEGEEFFFLDKDTRLCK
                     VAPEGWREQHPKGSVDTFTLFLRIRFFVGHYRLLRHSLTRHQFYLQLRKDILEERLYC
                     NDETLLQLGVLALQAEFGSYPKEQVEGKAYFRIQDYIPARLIERMTAIRVQVEVSEMH
                     RLSSAPWGEDAELEFLEIVQQLPEYGVLVHRVSPEKKRPEGKMALGVCTKGIIVYEVR
                     GSRRIATSQFPWRETGMISTHRKKLTITSSTTGKKYTFVTNSSKTCKYLLGLCSSQHW
                     FNAQTGSKHPSHRFTGQDKFAQIASLSSAHQTQANPITWIQKLSCSENELCVPRLQDA
                     TGGQLGTSMENKQGFKEPGKERIGSSPYTGGEQLHSIGLNQKPAQTVFGTAGHSMCAG
                     SNCLGRRTQICCFDSVSGSQNSKRKGLFGEPNQDIVCVMLKRDPVHGFGFVINEGEDA
                     EQTRSGIFISSLIPGGPAERAKKIKPGGKILALNHISLEGFTFSMAVRMIQNSPDDME
                     LIISQPKGVCGTIHSEEKNSTASSGMFCTDILSNRCQGRQSPHIHDQDRSVRGTEMAQ
                     GAGSCPPSPLQTNTGEIYFVELVKEDGTLGFSVTGGINTSVPHGGIYVKSIIPGGPAA
                     KEGQILQGDRLLQVDGVSLCGLTHKQAVQCLKGPGQVARLVLERRGPRAAPQCPSADD
                     RMGDVHMAVSLVTARPGRPASSVSVTDGPKFEVKLKKNSRGLGFSFVQMERGNCIHTK
                     SDLVRIKRLFPGQPAEEHGAIAAGDIILAVNGKPIEGLAFQEVLHLLRGAPEEVTLLL
                     CRPPPGILPEMEPGWQTPELSGDQRLTMATCAGSEQSPSLDQEDNWRDSTSLDAGEGL
                     SPGPESSYKDVRQVKGDREKERPWAKSWMHPMESHPHVCKLHPEPETPALATSLEKDM
                     RQNCYSVCDIRRLGSLELDRDGADGATCFLPESSSLTVDYEEYLTLTSASAGQLPCEE
                     CLEADSETIPLPQFCSLGALLKSSLPEESQGSESDWEDLDEPVDRDEVLRWTRSARQP
                     LAAEP"
ORIGIN      
        1 agtggcacct aatccggttg agcttagccc actggccttg aaaacaagct ctaggagaca
       61 gtagggcccc aaggcagaca gtgacaggga agtggagggg ccttgttgac atactcactg
      121 ggcttagtga ctgtcactga gtgcttagtg acaaacagta aacagaggca gactcagcag
      181 ggctggggcg gctccttcag gagagagact tgtgggccat tgatccctgt gtatattgct
      241 gagaagtcca tctaaagtga aggcctagac cagcttgcag agacgtctgg atgcggccat
      301 tggcaaagga cacaggtctt gtttggttta aagcattttc atgggaactt caaaggttta
      361 agaaaaccct gaatgaggtc aagcactgta tttccttcaa ctcatcgcca taaagtgtga
      421 gagctgaggg ttcagccagc tcgtgctgag tcccacaagg cttcaggaag gctgcagtgg
      481 cacccgcagg agagcaggca tgagtgtggc ctccgtgaca cttgctagtg ccctgcaggt
      541 cagaggagaa gccctctctg aggaggaaat ctggtccctc ttgtcactgg ctgctgagcg
      601 gctcctggaa gacctacgta atgattcctc agactacgtg gtctgcccct ggtcactcct
      661 gctctctgca gcgggaggtc tttctttcca agaccacgtt tctcacatag aggctgcacc
      721 attcaaggct cctgaactgc tacagggatc aaatgaagag gggcagcctg atgcatcaca
      781 gatgcacgtc tattccttag ggatgactct ctactggtca gcgggatttc gagttccacc
      841 aaaccagccc ctgcagcttc aagagcctgt acactccctc ctgctggcca tgtgtgaaga
      901 ccagccacgg agacggcagc cactgcaggc ggttctggaa gcctgccgga ttcatcagga
      961 agaggtggct gtatacccag cccctgccag tctccatatc agtcgactgg tgggcttggt
     1021 gctgggtacc atctccgagg tggagaggag agttgtagag gaaaacgcct gtgagcagcg
     1081 gaacagaagc tgctctctca ggagcaggct gcatcaggct gacggcgaga gccccggagc
     1141 tccggcctct gatgctctgc agcctcggag agtttcagag agaagcgcag agacacagag
     1201 ttccttggag cgatgcacag cacacagtcg caacagtttt gttaacagca catttgcagg
     1261 tgccggtccc tgtgactgtg aggagagtcc gtggtatggc tcagagccta tgctgttggc
     1321 agaagcagaa agctcgcagc cagcaacatc ttctccaagg aatttcctgc aaagaaaggg
     1381 aaagttctcc agaccagagt tcatcctgtt ggctggagag gccccagtga ccctacattt
     1441 gcctggatcc attgtgacca aaaaggggaa atcctacttg gctctcagag acctctgtgt
     1501 agtcttgctg aacggacggt gtctggaggt gaaatgtgac atggagtcca cagcaggggc
     1561 tgtcttcaat gctgtcatgt cctttgccaa ccttgaggag accacctact ttggcttggc
     1621 ttatgtggaa ggtgaagagt tcttttttct ggacaaggac actagattgt gcaaagttgc
     1681 cccagaaggc tggagagagc agcaccctaa aggttctgtg gacactttca cgctctttct
     1741 gcggataaga ttctttgtcg gtcactacag gctgctccgg cacagcctga cacggcatca
     1801 gttctacctg cagcttcgga aagacatttt agaagagaga ctgtattgca atgatgagac
     1861 actgctgcaa ctgggggtcc ttgccctgca ggctgagttc gggagctatc ctaaggagca
     1921 ggtagagggc aaagcatact tccgaattca agattacatt ccagcaaggc ttattgagag
     1981 gatgacagca atccgggtcc aagtagaagt ctcagaaatg caccggctca gttctgcgcc
     2041 atggggagag gatgctgagt tggagttctt ggagattgtt cagcaacttc cagaatatgg
     2101 agtcctggtt caccgtgttt ccccagagaa gaagaggcca gaagggaaaa tggccttggg
     2161 ggtctgcacc aaaggcatca ttgtctatga agtgagaggc agccgcagaa tcgcaacatc
     2221 ccagtttcca tggagagaaa ctgggatgat ttcaactcat agaaaaaagc tcaccatcac
     2281 cagcagcacc actgggaaaa agtacacctt tgtcaccaat tcatccaaga cctgtaaata
     2341 cttgctgggc ctctgctctt cccagcattg gtttaatgca cagacaggct ctaagcatcc
     2401 ttcccatcgt tttactggtc aggataagtt tgcacaaata gccagcttga gttctgcaca
     2461 ccagacacag gccaacccta tcacttggat tcagaaactg tcctgctcag aaaatgagtt
     2521 gtgtgtaccc aggttgcagg atgccacagg aggccaactg ggcacatcca tggagaacaa
     2581 gcaaggtttc aaggagcctg ggaaggagag aatcggaagc agcccgtata ctggtggaga
     2641 gcagctgcac agcatcggtt tgaaccagaa gccagctcag actgtcttcg gaacagctgg
     2701 tcacagcatg tgtgcaggtt ccaactgctt gggcaggaga acccagatct gctgctttga
     2761 ttctgtctca gggtcacaga acagcaaaag aaagggcctt tttggagaac ccaaccaaga
     2821 catcgtgtgt gtgatgctga agcgggatcc agttcatggc tttggttttg tcattaacga
     2881 gggagaagat gcagagcaaa caaggtccgg cattttcata tcttccctta tacctggggg
     2941 accagcagaa agagctaaaa agatcaaacc aggaggaaag atactagcct tgaatcacat
     3001 tagcctggag ggcttcacat tcagcatggc tgtcagaatg atccagaatt ctcctgatga
     3061 catggaatta ataatttctc agccaaaagg tgtttgtggg accatccaca gtgaagaaaa
     3121 gaacagtaca gcaagttctg gcatgttctg tacagacatc ctgagcaaca ggtgccaggg
     3181 aagacagtca ccacacatac atgaccagga cagaagtgtc agaggaacag aaatggctca
     3241 gggtgctggc tcttgtcctc catcccctct acaaaccaac actggtgaaa tctactttgt
     3301 ggagctggtt aaagaagatg gaacgcttgg attcagcgtg actggtggca ttaatacaag
     3361 tgtgcctcat ggaggaatct atgtgaaatc tatcattcct ggaggcccag ctgccaagga
     3421 aggacagatc ctacagggtg accgactact gcaggtggat ggagtgagtc tgtgtggcct
     3481 tactcacaag caggctgtgc agtgtctcaa gggtcctggg caggtggcac ggctggtctt
     3541 agagagaaga ggccccaggg ctgcaccaca gtgtccttct gctgatgaca ggatgggaga
     3601 tgtgcacatg gctgtttccc tggtaacagc caggcctggc agacctgcga gcagtgtctc
     3661 agtgacagat ggtcctaagt ttgaagtcaa actgaagaag aacagcagag gtttgggatt
     3721 cagctttgtg cagatggaga gaggaaactg catccatacg aagagtgacc ttgtgaggat
     3781 taagaggctc tttcctgggc agccagctga agagcacgga gccattgcag ctggtgacat
     3841 tatcctggcc gtgaatggca agcccataga aggcctcgct ttccaggaag tgctccattt
     3901 attgcgaggg gctccagagg aagtgacact cctcctctgc cgaccccctc cagggatact
     3961 gcctgagatg gagcctggat ggcagacccc tgaactatca ggagatcaaa gactcaccat
     4021 ggcaacctgt gctggatcag agcagagccc cagcctggat caagaagaca actggaggga
     4081 cagtacgtct ctggacgcag gtgaaggtct gagtcccggg ccagagtctt cctacaagga
     4141 tgttagacag gtgaaggggg acagagaaaa agagaggccc tgggccaagt cctggatgca
     4201 tcctatggag tcccaccctc acgtatgtaa actccaccca gaaccagaga caccagcact
     4261 ggccacctct ttggaaaagg atatgagaca aaactgctat tctgtgtgtg atatcaggag
     4321 actgggaagt cttgaattgg acagggatgg tgctgatggt gccacatgct ttctacctga
     4381 aagctcttct ctcaccgtgg actatgaaga atacctgacc ctcacctccg catccgcagg
     4441 ccagctgccc tgtgaagagt gtctggaggc agattcagag actattcctc tgcctcagtt
     4501 ctgttctctg ggtgctctcc taaagtcttc acttccagaa gaatcccaag ggagcgagag
     4561 tgactgggag gacctggacg agcccgtgga tagggatgag gtgctcaggt ggacacgctc
     4621 agcgagacag cctcttgcgg cagaaccctg agggtgtcgg catggacatc cttttggtgg
     4681 aagagccctc agctgatttt catccagaaa atgtacttgc ttgctctgta ctctgaaaga
     4741 agcatcgtca agacaatggg ctggggtgga gctcctgggc tagctatgaa gtgctaactt
     4801 ctaagagttt gtgcctgtta cttctgaggt tcgttatcat tagtagctac aacttcctct
     4861 tcagttctga agtttaagtc aagcaaattt gtgtgtgtgt gtgtgtgtgt gtgtgtggag
     4921 tggggtcccc ctcatgacct aaactgggaa ctaatttctt taggtgagat aagctggagc
     4981 agggaaagta tctggctgct acactggggc accattttcc aagatggatg ccacagtctg
     5041 gtttaactgt tgattcctca ttggtcaaag gactctgtgc ttatccaagt gtctcagtgt
     5101 cctggaaaac atctgacagg ggcttggctc aagggtcaca ggggaaatat ctttctgtat
     5161 tgatttttct atgtccttcc tttagctcca aatagtcatg tgttctttta aaattatttc
     5221 tcctcttttg atcctcaagc ctggttctca tcacatagaa agtaaagtgc agtagagtta
     5281 acattacttg atgttgatat gtaactgcca ccattaaaaa aatgaaaact agtagaatta
     5341 atacatgctt ggaagaaata gacctgttgg gccatagtgt aagtcattag cgtgaccctg
     5401 tataatggag accacatagc agcgacaagg tcacatcagg gaaatgggga caacctaata
     5461 acatcacgag catgtgcttg ttataggtag tgttctgcta taaaggctcg ttctgccgct
     5521 tatgggaaag aaatttccag caatctgaga agcccttgct tcagactgtt agaactccac
     5581 gtgctgctgc attgttttat aggctttggg tttggagaat taatgaacta tgcaataaaa
     5641 cgactaaata ataacattta tcaa
//
